GgaINT1005137 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2831620-2832136:-
Coord C1 exon
chr28:2831960-2832136
Coord A exon
chr28:2831843-2831959
Coord C2 exon
chr28:2831620-2831842
Length
117 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
CAGACTGATGCCCCCCTCAGGTT
3' ss Score
5.39
Exon sequences
Seq C1 exon
GTTTTGGGACCCAGGCCCTGAAGCTGACCCATTCAACGACCTGCACTACGTGTGGGGTGGCTTTGTCTACGTGCAGGACCTGGTGGAACAGGCGGTGGTGCGGGTGCAGACGGGGACCGCCCCACGGGTGGGGGTCTATCTGCAGCAGATGCCGTACCCCTGCTATGTGGATGACGT
Seq A exon
GTGAGTGCTGCAGGACCCCCAGCGACCCACTGCGCTGGGGCATGGGATGAGTGCTGCTGCAGGGCTGTGTCTGTTGGTGGTGGGACATGGGGGGGGTCAGACTGATGCCCCCCTCAG
Seq C2 exon
GTTCCTGCGGGTGCTGAACCGCTCGCTGCCGCTCTTCATGACGCTGGCGTGGATCTACTCGGTGGCCATGATCATCAAGGGGGTGGTGCATGAGAAGGAGGCGCGTCTCAAGGAGACCATGCGGAGCATGGGGCTGAGCAGCGGGATGCTGTGGCTCAGCTGGTTCCTCAGCAGCTTCATCCCCTTCCTCCTCAGCTCAGCTCTCCTTGTCCTCATCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(12.1=48.3)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(30.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGACCCATTCAACGACC
R:
CACCCCCTTGATGATCATGGC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]