RnoINT0010354 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12756060-12756669:-
Coord C1 exon
chr7:12756493-12756669
Coord A exon
chr7:12756283-12756492
Coord C2 exon
chr7:12756060-12756282
Length
210 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGA
5' ss Score
0.51
3' ss Seq
TTGCATATTCCACCACCTAGGTT
3' ss Score
5.31
Exon sequences
Seq C1 exon
GTTTTGGGACCCAGGTCCGTCAGCAGATCCCCTCATGGACCTTCGGTATGTGTGGGGCGGCTTCGTGTACCTGCAGGACCTGCTGGAGCAGGCAGCTGTGCGCGTGCTGAGTGGCAGGGACTCCAGAGCAGGCCTCTATTTGCAGCAGATGCCACACCCCTGCTACGTGGACGATGT
Seq A exon
GTGAGAGCATCCTGTCTGGGCTCCGTGGTTTGGAGGGAACCCAAAGGGGGCTCCCCGTATAGAAACAAAGTGGGCTATGCTGGGGTTTGGAACCTTTAGTCTGGATCAGCGCTCTGAGGCTGCTGCTGAGCCTGGAGACCCCCGTGGACATTTGCATGTGTGCACCCTGAGCAGGGGCCCTCCAGCTACATTGCATATTCCACCACCTAG
Seq C2 exon
GTTCCTGCGGGTGCTGAGCCGGTCTCTGCCTCTGTTTCTGACTCTGGCCTGGATCTACTCGGTGGCGCTCACTGTGAAGGCCGTGGTGCGCGAGAAAGAGACACGGCTGCGAGAAACCATGCGTGCGATGGGGTTGAGCCGTGCTGTGCTCTGGCTTGGTTGGTTCCTCAGCTGCCTGGGACCCTTCTTGGTCAGCGCTGCATTGTTGGTGTTAGTGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(12.1=48.3)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(31.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTGTACCTGCAGGACCT
R:
GCAGCTGAGGAACCAACCAAG
Band lengths:
292-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]