BtaINT0011178 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45169113-45169846:+
Coord C1 exon
chr7:45169113-45169289
Coord A exon
chr7:45169290-45169623
Coord C2 exon
chr7:45169624-45169846
Length
334 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGC
5' ss Score
4.3
3' ss Seq
GCAGCTGCCCACTGCCCCAGGTT
3' ss Score
4.46
Exon sequences
Seq C1 exon
GTTTTGGGACCCCGGTCCGGCCGCTGACCCCCTGACGGACCTGCGCTACGTGTGGGGTGGCTTCGTGTACCTGCAGGACCTGCTGGAGCGCGCAGCCGTGCGCGTGCTCACAGGCACCACCCCCCATGCCGGCCTCTACCTCCAGCAGATGCCCTACCCCTGCTATGTGGACGATAC
Seq A exon
GTGAGCACCCTTTCCTCACTTCTCCCAGATGCCAGATCCTGGGTCTCAGGGTGGGGGCCTGGGTGCCATCTGGAATATTCACGCAGTCAAAGCTGAGAACTACGGTTCAGAGGGACCACTCCCCGTGACCTTGTAGCTGGAGGAGCCGGGATCCTTCAGGGTCTGGGGTCTCTGGATACAGGGAGAACGTAACCTGACAGCACCATCAGGAGTCCGAGGACAAGGAAGGGCCAATGTCCTCGCCGCACCTTGGGGTCCCAGGGCGGGAACTGTCGTGCCAGATGGGGGCAGCGCGGGGGTCTTTGGCATCCACCGCAGCTGCCCACTGCCCCAG
Seq C2 exon
GTTCCTGCGCGTGCTGAGCCGGTCACTGCCACTCTTCCTGACACTGGCTTGGATCTACTCTGTGGCGTTGACGGTGAAGGCCGTGGTGCGTGAGAAGGAGACTCGGCTGCGCTACACGATGCGCGCCATGGGGCTCAGCGCCACTGCACTGTGGCTGGGCTGGTTCCTCAGCTGCCTCGGGCCCTTCCTCCTCAGCACCGCGCTGCTTGTGCTGGTACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(4.1=15.0)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(33.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTCGTGTACCTGCAG
R:
TTGAGTACCAGCACAAGCAGC
Band lengths:
343-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]