MmuINT0008020 @ mm9
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79474458-79474780:+
Coord C1 exon
chr10:79474458-79474587
Coord A exon
chr10:79474588-79474659
Coord C2 exon
chr10:79474660-79474780
Length
72 bp
Sequences
Splice sites
5' ss Seq
ACAGTCAGT
5' ss Score
0.29
3' ss Seq
ACTAACCTGTCTATCCTCAGATC
3' ss Score
10.45
Exon sequences
Seq C1 exon
GAGACAAGCAATTTCAGTCACCCCTACGCTGGGACATCATTGGCAAGAACCTCCTGGCCATGATGGCCCAGGGACCTCTGTTCCTCCTCATCACACTCCTGCTCCAACACCGCAACCGTCTCCTGCCACA
Seq A exon
GTCAGTGGGGACCAGGTGAGGGCAGCAGGGGCCAGAGTCCTTCCCAGGGTCCACTAACCTGTCTATCCTCAG
Seq C2 exon
ATCAAAACCAAGACTGCTGCCGCCCCTGGGGGAGGAGGATGAGGATGTGGCTCAAGAGCGTGAGCGGGTGACCAAGGGGGCTACCCAGGGGGATGTGCTAGTCCTCAGGGACTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-Abca7:NM_013850:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.488
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(9.8=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGACATCATTGGCAAGA
R:
CTCACGCTCTTGAGCCACATC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: