GgaINT0144871 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2378982-2379318:-
Coord C1 exon
chr28:2379189-2379318
Coord A exon
chr28:2379103-2379188
Coord C2 exon
chr28:2378982-2379102
Length
86 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CCCCACTGCTGCTCCCCCAGACC
3' ss Score
7.3
Exon sequences
Seq C1 exon
GAGACAAGCGCTTCGTGTCCCCGCTGTCCTGGGACTTAGCAGGGAAGAACATGTTTGCCATGGCCATCGAGGGCACCATCTTCTTCCTCTTCACCGTACTGCTGCAGTACCGCTTCTTCCTGCGGCTCCG
Seq A exon
GTGAGGGCTGGCCAGGGACGATGGGGGTGATGGGGGCACTGGGGACTATAGGAGATCCTGGAGGTTCCCCACTGCTGCTCCCCCAG
Seq C2 exon
ACCACGTGCTCTGCAGCTGCCCTCACTGGGGGATGAGGATGAGGACGTAGCCCGGGAGCGGGCGCGGGTGGGCAGCACCACACGGCGCAGTGCCGTCCTGCTGCTGAAGGACCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.0=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTTCACCGTACTGCTGC
R:
CTTGGTCAGGTCCTTCAGCAG
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]