RnoINT0010381 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12745796-12746118:-
Coord C1 exon
chr7:12745989-12746118
Coord A exon
chr7:12745917-12745988
Coord C2 exon
chr7:12745796-12745916
Length
72 bp
Sequences
Splice sites
5' ss Seq
ACAGTCAGT
5' ss Score
0.29
3' ss Seq
ACTCACCTGTCTATCCTCAGACC
3' ss Score
9.93
Exon sequences
Seq C1 exon
GAGACAAGCAATTCCAGTCGCCCCTACGCTGGGACATCATTGGCAAGAACCTCCTGGCCATGGTGGCCCAGGGGCCCCTGTTCCTCCTAATCACACTCCTGCTCCAACATCGCAACCGCCTCCTGCCACA
Seq A exon
GTCAGTGGGGACCAGGTGAGGGCAGCAGGGGCCAGAGTCCTTCCCTGGGTCCACTCACCTGTCTATCCTCAG
Seq C2 exon
ACCAAAATCAAGACTGCCGCCGCCCCTGGGGGAGGAGGATGAGGATGTGGTTCGAGAGCGTGAGCGGGTGACCAAGGGAGCCACCCAGGGGGATGTGCTGGTCCTCAGGGACTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.549
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGACATCATTGGCAAGA
R:
CTCACGCTCTCGAACCACATC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]