BtaINT0011205 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45177978-45178299:+
Coord C1 exon
chr7:45177978-45178107
Coord A exon
chr7:45178108-45178178
Coord C2 exon
chr7:45178179-45178299
Length
71 bp
Sequences
Splice sites
5' ss Seq
ACAGTCAGT
5' ss Score
0.29
3' ss Seq
ACTCATATCTCTGTCCTTAGACC
3' ss Score
9.39
Exon sequences
Seq C1 exon
GAGAGGGGTATTTCCAGTCGCCCCTGCGTTGGGAGGTGGTCGGCAAGAACCTCTTGGCCATGTTCATACAGGGGCCAATCTTCCTCCTCTTTACATTACTGCTTCAGCACCACAACCGCCTCCTACCACA
Seq A exon
GTCAGTGGGGACCAGGGAGGGTGGCAGGGACTGGGGTCTCGCTCTGGGCCCACTCATATCTCTGTCCTTAG
Seq C2 exon
ACCCAAGCTGAGGCCGTTACCCGCCCTGGGAGAGGAGGATGAGGATGTGGCCCGTGAGCGGGAACGGGTAGTACAAGGGGCCACCCAGGGGGATGTGTTGGTACTGAGGGACCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.244
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.4=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGGGCCAATCTTCCTCC
R:
GGTCAGGTCCCTCAGTACCAA
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]