MmuINT0018101 @ mm9
Intron Retention
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:121684733-121691503:+
Coord C1 exon
chr3:121684733-121684867
Coord A exon
chr3:121684868-121691406
Coord C2 exon
chr3:121691407-121691503
Length
6539 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CAACTGATCTTTGCTTATAGCTG
3' ss Score
6.96
Exon sequences
Seq C1 exon
ACTGTTTTAAAGAAGTCATTCATATCCGTCTGGATGAGCTTCTCCGTGTTTTAAAGTCGATATTGAGCAAGCATCAGAACCTCAGCTCCGTAGATCTTCAGAGCGCTGCAGAGGTGCTCACTGCAAAAGTGAAAG
Seq A exon
GTAAGGGGGCTTCCTTAAGGGTGCGCCACTGAGGGCCAGAGGGACCCAGTGACACCTTCATGTGTCAGGCCACATCTCCTCGGGGTGGCACATTAAGCTCCCAGCTATGATGGAGGACAGACTTACCAGAAGAAAAGGTTACCTACCGTTCCGAAGTTTGACAGCTTGGGTGTGGGCATTAACTGAGCTGTCACGGGTGAGGCTGCAGTGTAGTGGGCTACTGTATGAGACCTGGACACGCAAAGCCTGAAGAGAGTGGTGAGATGCTCATATTCAGAAAGGACAAGGAGAAGGCATTGTCAGGGTGAGGCAGAAAGGAAATAAAGGCTTTGCAATAAAAATGTAGCCTATATCCTGCCCTTCCCCCCCCCCCACTCCCAGCCCCCACACATCTCTTTCTGACTTAAGACTTTTCCTGTTTGTGTGGTTTCCTTTTTTCTATTTGAAGCATTGAGAGGGAAAAGGTGCTGTAGACAATTTTAAGAGGGAAACAGGGGTGGCTTGTTCTGTGACTCTTAAAAATAAGCTTAGTAACCAGATTTGTTTTTAAGTAGATTGTTTACAGGTACCATTTAACTTTACTTAGATAGGGAAATTTGTGTCTATAGATAGTAAAATTTCCATGCTTGGAAATAGCGACTTAGCTCAATTGTTGTCGGTGACTATTGTGTGCAGTCAGGATGTCCTGGGGAAGGAGCACACCAGCATGTGGCTGGTGTCCACATTCCAGAGACAGCCCTCAAGAGTGTGGGCTCTAGCTGCCTCGAGATCCTTTTAACCTTGAGGTAAAGCAATCTTTTAAATAATATTATTTCACACGATTGTCATTATGCTACTTTGGTGTTGGATGGAATTGGAAAGAGGAAGATAGGATTGATTTGTTGGTGGGAAACTGTTTCTGTAGGATTCCATGGAAACCAGAAAATGTTACAAGGGGTTTTTTGCTTTTGTTCTTGAGACCCTCCAAAAATGAGTGACCTGCATAGTTGAGGCTAAATCAGAGTTTATTTAATAGCAACTTAATTTTCAAAACCTAAGAAGGCAAGAAATTGGTAGAAATCATTTTTGAATGCAGGAGCCAAGCAGCCTAAATGTGTTGGTGCTTCCATCTTTGAGGCAGGGAGTTCCTGTCTTCTTCATTTTGGGGAAAAACTTCAAGAAAAACAATTGTATAGGATCAGCGAGCTATAGGAACGGAGTAGTAATCTAGATGGTTCTTACAGTCCTAGCCCCTAATTACATCTTTAAAAACAGCAGTGATCTGAGCAGCTATCTTTTTTGGATGTATTAACTGCTAGATGCAGTTTGCAAAATTGCCAAACTGTTCAAAACAAAATTAAAATGAAACCAAACACGTAATACAGAGTAACTTCAGGGCTGTATAGTCTTGGTTGTGTTGCCACAATACATTTAGTTTTTATACATAAAACAGAATCTTTCTGTTGCTTTTAAAAAAGCCTGTAAACATGGAGTCTACCTTGTAATAACTTTAAAGGAAAGATTCTTAGCTTTTTCCCATTCATCTGGCAGTGATTTGTAGTTCCTGTGTCTCTTTCAATTTCCAAACAGGAAGTTCAGTTGACAAAATATTTGCAATATGGTAAGAGAGATACAGCCTATTTTTGAAGCAGATAAAGACATCTTCATATGTCAGTAATTTATGATGTTCTTAATATTTTCAACTGTTTAGGTCAATTTTATTTGTAATATAAATGAAAAATGTTTTTAATATCTACATATTTCCCTGTATTCATAAATTGGCAAATAGAAAAAGACAAACAAGCCTCAATCAGACACACAGCATTGTTAAACCCTCATCTTTCTTTCTGTTCTGCAAACCTGACTTTTCAACATGGAGCCATTCATTCTGGTCCTGGATAAACAGTGACTGTCACTGATTTCTTTTGAATCTTTCCAGAAATACACCAAACACAGACAAGCAAGCACAAGTACAATCTCCTTGCTATATAAATGATAGTATCCTACTTCTTGCTATACAAATGATAGTACCTTACTTCTTGCTCATTTATCTGCACATAAAGCGTTTCTCAGGTCTTTGGCTTTTCTTTGATGTTTTTCAAAGCTGTTTGGAGATACATAATGTTGATGTGCTATAATCTAACCAGTTCATTCCCAGTACATATTTAAATTATTACCTGCTGATGCTTCTATGCATAGTCAGGCAAATTCCTAGTAACTTGGGTATTGAGAGAACTTGTGCTTTTTTATATTGTCATATCCTCCCTCAAGCCATGCCCTCTGATAGTGTGAAGGGAGATGGTTTACCACCCCCCTCCCATCAGCAGTGCTAGCTATCAAGATTTGTTACCCAGGCATGTAGCAAAAAACCATTGTCTTGGGGGAGTTTGAGCTGCATTCTCTCCAGTTTGAAGGCAGTTGAGTATGTTTCAGGGTCATTTGTACATCCTTTTATTTGAGTTGGCTTATTACCTGGTTTTCTCTTGGTGTTTAATATTCTTAAAATATAATTTATTTATTGAAACTTCGTATTTCTAACATTAGCTCTTCAATATAGTTTATAATTTTACTCTTTATTTATTTTTACACTTTAACATATCAGTCCTTTTTGTGTGTTTTGAGTCTGAATTATTAGGATGGCCTTCCATACTCTGAAGTTTCACCATTCTCTCCATCTTTTTTCCTAAAGTTTTTATGGAATCATTTTTAGGTTTAAGTCTAAAATTTAGAGAAGCAAAATGTGTTCTTTTAAGGGGGTCACAACCCCTTTGGGAGCTGCATATCAGATATCCTTCATATCAGGTATTTACCGTATGATTCATAACAGTAGCAAAATTATGTTTGGGAGTCACCACAGCATGAGAAACTTTAGTAAAGGGTCACAGTAATAGGAAGGCTGAGAGCCATTGGGTTAGAGAAGGCCAGTAGTTGTAGGAATGAAAAGAAAGAAAACATTTTAGAAGCAAAACTCTGAGCTAAACAATGTATAGGAAACAGCAAGTGGAAAGTAGAAGAAACATCCGAAGGAAGCTCTTGTAAAGTTGCTCTGTAGCGAGCGGACAGCACCTGGACAAGTAGTTCCTTGGCAGTATAGAAGTGATGAAGTTCTGTGGGGTTAGGAAGGTATAGAGGGAGTAGCCTAGGATGAGATCTACACAAGGTAAAACTGTCTAAAGAAAGGTACAGAACTGAGGCACTGCACATAGATACGGAATTCCAGCCACTAGATCCTAGAGACTTAATTCCATCCTTGATATGCTACTTGATATTGCATGTCTAAGAAGTGAATTTAGATTGTGTCAGCACTAGAAGTAGTCAAGGTCAAACTTGAACCCACGTTTGGCATTTCAAAGCTTTATCTCTTCCATGTATTATAACAAATAACTTTTAAAAGAGTAGAGTATGTCATGATGGAAGGAAGTGGTCTGTAATGATACTTATAGCTGATATTATTTAGGATTGATGCTGCTGCTTGGCAGACATTGTTAGACTCTTCACAGGGATGCCCTCCTGTAATCATCCCAGTTCCAAGATGAATAAACCTGTGAGATCAGCTTCCTCTTAGTAAATGAGGAAGCTGAAGTAGGAGGTTTGTCCAAAGTTGTATTCATATTAAGTGGTAGAAGAGTTGAACATTGAGGTAAGTCAAGGAGATTGAAGACTAAGGTAGAGAAACCCTCGGTTTTCACTGATGGAAGCTGGTGCTTTGATTGACAGTGGTCTTGCATTGTTTAATTCCCACAACTGTTGAGTTTATAATTGTCCCACTTAATAAATGAGGAAACTGACTAGAGACTTTAATGTTTATGTATAGTCAGAGACAGAGCTGAGACTCAGCCCATGCAGGCTGTTTGTAGACCCTGTCATCATACCCAGGAGTCGGCAGCGAGAGCTCGAGGGCTGAATGGAGTTATGGGAACACAAGTATTTTACTCTTTTCTGGGTGGCCTGTAGCTTCCTTCAGTACCTCTACTGAAGGGTTAGGTTAAACCAAACATGTCCTGGAAATTATAGGCGAGGACTACCTGGCTCTTTATAGAAAAAGTTATCATTGAACTGGGTAAAAAAGCCCAATCTTGGTGAAGTCAAGATAATTCATAGTGAAAGGAAAACAGTCATTACATCCCATAGAGATTTGGTAGAGAAAAATGGAAATTAGATTGGATAGTACCTTAAGAAGAAACATGGTAAAACAAAATTTTTCTTTCACATGGCAAGGATATTGAACCTTTTTTAGGAAAAATGTTAATTGGATGAGATCTAGTGAAAGAAGGAAGGAGGAAGGAACAGTGTTGGTTCAGGGTTTTGAATATGTTGTTGGTACAAAAGAATGAACCACATTAGGAACAAGAGCTGCCCTGAAGGGGACGGAAAGGCACTTACAGTGTCTCATTAGGTGACCAAGACTCTGGTCTCTGGTGGAGTAGGAATGAAGACAAGAAAGATGGCTCAAAAGAGTTACCTTTCTATTACTTACAGTCATTATAACAATTATTTGTGTCTCCTAATTGTGTTTAGTGTCATGAAAAGATATACCTATAGGAAAAAAAATAATTATAAAAATTGAGACAGTATTATAGAGTACTTTTCAATGAACAATTAAAAATGGTTTTATTGTGGTCTAATTGATAGACATCAAGCTCCTCTCAGTTATTTTTTATAAATGTTGCTACATCCCATTCTTGTGAAACTGTCTGTCGTTAGCATTGCCTGTGTCTTCCTCCCTTTTCAGATTCTGACGTTTCATATGTTTATTTCCATTCTGTTCAGAGTACTTCTAATTTCATTCTTTGTATTTGACCCATAGGTTATATAGCAGTATGCTATTTAATTTCCAAGTTTTCAAGAACTTTTTACAATTTTTTTCTGTTAATTCTACTCTAATTCCATGAAATCAGAGAATATATTTTGAATAATTTGAATAGTTATGCTTATTGAGAGGTAGTTTATGTCCCATAATATAGTTGTGTTTCTAAGTATTGACTTGAAAAGAACTTGTGTCTTGTGCATTTTGCTTCTGGGTAGAGTTGTACAAAATATCTGTCTTGTCAGGTTAGTTAATGCGTATCATTTGGAATTCACTATCCTGCCTTATTTTATGTTTTCTATCACTTATTGAGAGTATATCCATTTCTCAGTGTGGTTGTGTCAGTTTTTGCTTTGTGAATTTTTCAGTTCTATATATTTATAAATGTATGTACACAAATGTATAAATTTGTTATGTTCTCCTGCTTAACTGGTTCTTCAGTATTGACATTTTTTTAAATACCTCTGGACATATCCTTGGTTTGGGAATCTACTCTGTATATTAATTAGGCAATAAACTCGGGCAATTGTAAACTATGGTTAGTTTCATGTTGGTCAAAAATTACTGCCTTTGTTTGTTTGTTTGTTTTTATTTCAGGCAGAAGTAGAATCTGTTCAATTTGACGAGAGCAAAGGTCTAGAAATATTCTTAAAATTACTTGTATTGACTGGTTCTTAAGTTTCTTCTTATTATAAGGGACATTTAGAAAATTTTGATGATAGGTAGGGATCTAAGTGTCACTACCCCATAGTCTACAGAGGCATATTCATATACATACAGTTCTGGTTATAGTTCAGGGGTTCTTGCTTTCTAACCATATTTGCATATTTGAGTCAACTTCTAAAAAAGCCCAGGCCTATGAAGTCTTTGGTGATGCAGCTATTTTTCGAACTTTAGCCAAGATACAAAGCGAGGGTAGCTTTCTAGCTTCACCATCTTCTTTTGTAAATACATTGGTGCTGGAAGGGACAGCTGCTTCTTACAGAGTAACATGGCTTGCTTAACAGAAAGACCAATTCCAACTTCATATTTTGCCTTAGTAAATTATGTCTTGGGTTTTAACAACAGTTCACAGAAAGAAACCAAATAACCTTTTCAGGTTGTATTTCATAATATTCATTAACAAAATGCAAAATGTCAAAATATCCCTACTATAAACAAAAAGTTATGTCAGTTAGCATGTACTTCAGATCCCAAGGGCCTGTTGATAGGAAATAAAGCTATGTGTAACTAGGACTTTAACTTTTCTAAAGTACTGGGTTTTTAATGTGATGCTATATCATATAATTTATGATATGCAAATGCATCTAGGCTCCAGTTGTTGATAGTTTATATTAACCTTGTACTTCATATCGACTTCAATGGACCGGTATCTTTAGTTCTTTTTTAAAATTCCAGAGAACAGTAAGTGAGGAAAAAAACGAACAAACAACCCAGGACACTCCATAGAGGCCAGGTACAGCATGGACTCTGACTCCAAGGCTGATTTCTCACGGAGTCACCTTTTAGATGTGTTGGATTGTGTCATGCATGTATACTGGACTTGCAATCCCAGCTACTTCTTTGCAAACTGATGCTCTTCATGATTCCCTTAATGAAGAACGGAAATGTTCTGTTTGCTTGTATAGTAGATTTTAAGTCTCTACCTCTTTGTGCTTTGAAGCAATGGTGATTAAAAGAAGTAAATGACTTGGTATAAATCTGGTGTTAAATGTGTTTTCCTCCACTTACTGCAACTGATCTTTGCTTATAG
Seq C2 exon
CTGTGAACTTTACAGAAGTTAATGAAGAAAACAAAAACGATATATTCCGAGAAGTCTTTTCCTCCATTGAAACATTGGCATTTACCTTTGGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-Arhgap29:NM_172525:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145811=SseB_C=PU(59.7=93.5)
A:
NA
C2:
PF145811=SseB_C=PD(38.9=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: