MmuINT0036557 @ mm10
Intron Retention
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:115973728-115979495:+
Coord C1 exon
chr5:115973728-115973832
Coord A exon
chr5:115973833-115979354
Coord C2 exon
chr5:115979355-115979495
Length
5522 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CATCCCCTCCGTCTCGCCAGCAA
3' ss Score
6.74
Exon sequences
Seq C1 exon
CTCAACGACCTGGAGAAGAAGCACGCCATGCTGGAGATGAACGCCCGGAGCTTACAGCAGAAACTAGAGACAGAGCGGGAGCTCAAACAGAGGCTTCTGGAGGAG
Seq A exon
GTGAGTGTGAGCCACCTAGGTGGTGACACCTGTGCGTGAGTTACATACATGTGTGTGACATACATGTGTATGTGTGCACGTGTCACATACATGTGTCTTACATACGTGTGGGGGTGTTATGTGCCCACGTGCTTACACATGCAGAGGACAGAGGAAGCATGTTGGTGACTTGTCTGTTGCTGTCCACTTTATTACCATGAGATGCAGCCTCTCATTGAAATGGAAGCTCGGCATTTTGGCTAGACTAGCAAGCTCAAGAAATCTGGGTGCCTCTGCCTCCACCCTGAGGTTCCAGGCCCCCACCCTGGGGTTCCAGACATCCACAGCTACACCCAGTGTTTGGGCGAATGGCAGAGGTTCCAGCTCAGGTGCTCCTTCTTGCATAGGAAGAATTTTTTTACCCACTGAGTGTCCGTCCCGTCCCGTCCCGTCCCCCCACACACCACCACCACCACCACCACCCCCCCACCCCCCCACCCCCGCTCCTCATAAGGTTTTGAAAGAGGAAATCTGTTATGTTATATTCAGGTGATTGGAGCCAAATTAGACATTTTAGAACTACAATTTTTGAGGTAGAGTAAGGGGAGTGTAGAACACTTTCTAAAGCTTGACACAGTAAGAGTGTCTCTCAGAGGCCAGAGCATCTCTGGTGCTTGTGTCTTCCGATGTGACACTTCATCACAGTAAGTATACGCCCAACAGAGAGGTTCATTGAGCAATGGCTGAGTGAGTATTGAGTTGGATTGTCTGTAGAGTTGACAGTTAAGTTCGGAGTTGGTGGAAGGTCCATGCCGATTAGCTCCCTACACAGGGCAAAAGCGTGGCCAGATTTTAAGTACCAAATGTCACGAATGGCTTTTGAACCTGGACTTAATTCAGTTGAAAAAGAGTTCTCTGGATCTTGAGACTCGGGGTGCCAAGCTGAAGCTGCTCTCCCAGCGCACCCCTCCTTCCGTTCCCTGGCTTTTCTCCTCAGAACTGAGCATTGCTGTGTCCATTGGTGAGGACCTCCTTTCCCCATCCAGAGTCTCCCGCCCAGAGTCGCAGATTCTGCCTTCTCACTTAGCCTGACCTCCAAGGGCAAATGTCCTTCCTGTTGATACCCAGTGAAAAGATGGGCTCGAGAAGGCTCTGTCCAGACCCCAGTGAGCCTCATAGTTCAGTTAGCCAGAATCCCAGGATAATCAACATGGACAGAGCTCTCCGGGTGCCCTGCTGGTGGCTGTAACTGGGCCATACTGTTCTGTCTGAGGGAAGTAGGGAAAAGATTGCGGATCTCAGTCTGCTTACACACGGTGTCTTATAAAATCACACCTTAAAAGCCATAGCTGGGCGCTTGGGGAAGTTCTGGAGACAGGTGGTAGTGTCAGGTGTGCAGCAGTGTGTTCGTGTGACCGTCCTTAATGCCACCAAGCACACTATAATGGGGGGTGGGGCGATGGCACAGCTGGTGACCTGCTTGCCATACAACATGGGGTCTACCTGGGTTGGGATCCACTGTGGTGCAGTGGCTTGTCTCAGACTCCAGTGCTGCGGAGGCACGGCAGAGGCATTTCAAAGATCTCTTGGAGATGGGACCCAAGTATAAACATGAAATTCCCCCTTACATCATATGCGCCGCACATACATAGAGCAGGAGTGATGTTAGACCGTTACTGCATGCGGTTCTGGGGCTTGAACCCGGGACTGGGTAAGCACTCTATCCCAGGCTGTACCCCAAGTCTTTGCCTGGTGGTTTTAACGGCCCACGTTTTGACTGTGCCTATCACATGAGATCAGTTGTGGCATTTTTCTACTCAAGAAATTTTGGGATTGGGAGCATTTCTAAATTTGGGGGTTTGTTATTGCGAGTGCTTGACCTGCAATAGGACCCGTCAATCTGCCAGGTGGTCCTTTCTCTGGGATGAATAGGCAATGTTCCCCCATTCTGTTCCCGCATGTGGGGAAACAGAAGCAGGATAGACATAATCAAGGCTCCCGAGTGTCCCACTTCCCATCTGCAGAGGGCAGGCTGGCCCGGACAGCTCCACGCTTAGTCCAAGGTTACACGGTGACTCAGTGGCAAAGCCAGGAATAGCATGCTGAAGCCTGACTCAGCCCCACCTTCTCACTCGGGCTGAGAACACTCCGGATAGATATTTGAATAGACATCTGGCCAATATCGATCTGAACTGGAACTCTCACACATCATCAAAAACCATTACAAGGCAAAAAAAAAAAAAAAAAAAAGTAACTCTTACCAGTCAGAACATGTTGGGATGCTGGGTTATGGTGTGTGCTTCATAAGTTTGGCCACACCCAAAGGGCTGTCTTCAAGGGACAGAGACTTTGAAAAGAGACAGACTTTGGAACTTTTAATGTTGCCCAGCTCAAATCCCTCTCATGACCGACTCTCCCTGGCAGGTTTTACAGTGGTTCTTTCTCCCACCTCAGCCCTTTAGAAGTCCTGCTGGAGATGAGGGTTCATTCACCCATTGGTTTGTTTCCGACACAGGGAGGAAGGTCCCCGCCCCAGCTCGTCACACAGGGAACATGGACATCACTTCCTTGTTTCCAGCAACCCTTAATTCCTAGAAAATCCTTTTCTTATTTTGAAAAGCATACGGCTGCCAAGTACTTTGAAGCTAGTATAGTATCAGGAATCAATATTAATAGTCAAATTTGCTTTTATTCTTATTGACGCGTATGTGCCTGTCCGTATGTGTGTGGGTGCCTATGGGAGCCAGAGAGGACATTGAATTCCCCTGGACCTGGAGTGATAAGCAGTGGTGAGCTGCCTGACGTGGATGCTGGGAACAGAGCTCAAGTCCTGTAGAAGAGCATCAAGAGCTCTTACCACTGAGCTGTCTTTCCAGCCCCACGCTATGCATGGGAATGTGGCTTTTCTGGCTGAGTTGTTAATTGCCCAATGTCTAAAGGGCTGGGGTCCAACCCCCAACAGAACAAAAGATAAAAGTCCAACATACACAAAACAAAAACAAAGAAGTCAAAAACCAACACACACACACACACACACACACACACACACACACACACACACACACTCATGAACAACAAATGTCTGTCACTAACACAGTTACCAGGTGTCTTAGTACCATGCATGAATTTGTTTGTATTGTTCTTGCAGGAACCCCATGGGAGACCTGTGTTCTTTCTTGTCCCCTGCGTGGCACTAGCATGGTCTGTGTGTGCTCCTTATGTAGTGAAGGATTTCCATCTCTCACTCCAGCTCAACAAATCCTGACAGTCACTTGGCTCTTTGAGTTACTGTGCCATTGAGGCCCTTAACCTACGAAATCATGCCTGTTGGTCCACAAAGTTTGTCCTCGAGCGTCTTCCCACCCCATACTTACTCAGCTGATGTTGTGAAAATGCCGTCCTACCAAACCGTTTCTCCTTCGCTCCAACCCATCCTTCCTGCTCCCTCCAGTTGTTCATGCTCCAGTTCTGTCACCAGCCACCTCTCAGTTTCCTGTCGCTCTCATAAAGTGCTCGGGACAGGTCTAAGCACATCACCAAGGTCCACGTCCCCAGGGAGCCCTGGCCCGCAAGCACACCCCGCTTAGTCTCTCTCCGGGCAGCAGATAGATAGATGGCTTTGCGCAATAGTCCACGGAGAACAAAGATCCCTTTCCTCTGGCTTTGATTATAGTAAATAAACAGCCTGTTTCCCGGCGAGCCAGTGGAGCATGGATGTGTTTAGTGTAAAGAAATATTTTTGGCCCAGCTGTCACCAGGTGGATCATTTGTGCCTGTGACATGTTTCTCTTGGTTCCTGCTTGCTAATTAATGTCCTCCTAAAACAGTGGAGGAAAGGAAGGGAGGAAATCACTTGAACTTCACGGGACCAAAACTTCCCTTCAAGGCAGCGTCCTTCTTAACTGGTTTCTTTCTTTTTTAAATAGGACTTTGCTTTATTTTAGAATGCTAAGCTATGCGCCTCAGGAGTGACTTCGCTCTGTGTTGGGTCAGATACATGATTGAGCCAGCCTGCAGGAGGAAGTGTTTATTTCCGCTCAGAGCTTCAGAGGAACTGTCCATCTTTGCGGGGAGGGCTTTAGAGGGGTGGACACCACGGCAGCCAGGAAGTGGCGAGCAGGAGACGGAGGGTTCATGGCAAGACACAGTCCCCAAGGATGTCTGGCTTCCACGCAGGCCATGCCTCCTGTCACTTAGCCCCTCCTCAGGCTACCAGTGTCATACTGGGACTCCATCAAAGGTCCACCAGGCCAGAGTGCCTAAGATCTAACTTCCTGGGAACTCAGCTCCAAGACTCCCAGATACGCACCACTAACCCCCTTCCCTCAAAGCCGAGCATTAATTAAGTTGAGCCATCTCGGGTGCTAAGTGCAGCTGGGCTGGGCTGGCAAGAAAGGCAGATGGGGAAGAAGAGAAGGAAGAAGGACAGACACAGACTGCCAACATCTACATGAGCACCTACTGTGCGTGACAGACACTGTCACCTGGGGAGGCAGGGTACACCATCCACTCGGGAAGAAGGAAGCCTGGGCACTGCAGCTTTCGTGTGACAGAGTCAGGATCTAAGCAGGGTCCAGATTCTACTTAACACAGCTCCATGCCTCTGGCAGTCGTTACCATAGAGATGGGGAGCAAGGCACAGGCAGGAAGCAGGGAATGAAGAGGGCCAGGGCCAGCCAGCTCTGAGGCCACTGTGCCTCTCACTCTGTGGGGGTTGGGGACTTGGGGTGTCAGCCTTGGACTGTTTGAAAGCACCCACGATGATGTGTATTTTGCTTTCTTAACTTGCTTTCCCTTAGTCTGCAGAGTCTAGCCCACCAGGAAAGACTGCAGTAGCTGTGGTGACACGATCACCTGGGGTACATGAAATCAAACAGGGTCTCCCTGGACGGCACACATTTAGACAGGAGCTGCTTGACTTACGTTTTAATTAGATTTTCTTTTTTTTTTTTCAACACAAACTCTCTCCAGTGAAACCAAATTTTTTTCCTTGGGTTTGACCAGCTCCTGTTGAATAGCTAGGTCCTTCTTCCTTTGTCCCCACACTGTAGAAATACATCCTCTAATTGTGGCTATTTATATACGCAGGGCCAACCTTCAAGTTAGGGCTGATGTGACTTGGTGTGCACACCACCACACACAGCCTGTACAGTGGCTTTTCTGATCACCCACTGAGGTCTAGGACACTCCCAAGTGGAACAAATGGAGCTGATTCTCACTGCTTCGCTACCAGCTCTGGGCTGTGCTCTGAGGTGCCAAAATGGCTGCCTTTGTAACACAGAATGAGCGTGGGCCAGGACATCAGCTGCCTTGCAGTATGAAATTACAGGCATGTGGCCTTCAGGGGAGTCCTAGGACCCTCTTTTTCAGCTGTGTCCTCCTGTCTTGGAATAGAGACCAACCAGCAATTCTGGGAGGAGTTGCTCTCACAAGGGAACTTCCTGCATCACTCGGGAAGTCAGTTGGGGAACGGGATCCGGGGTGGAAACAGAGCAGCACCGTGTGCGATGTCAAGCCTTTTGCCATCCCCTCCGTCTCGCCAG
Seq C2 exon
CAAGCCAAATTGCAGCAGCAGATGGACCTGCAGAAGAACCACATCTTCAGACTGACGCAAGGGCTGCAGGAGGCGCTGGACCGGGCGGATCTGCTGAAGACAGAAAGGAGCGACCTGGAGTACCAGCTGGAAAACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516:ENSMUST00000051704:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types