HsaINT0035536 @ hg19
Intron Retention
Gene
ENSG00000122966 | CIT
Description
citron (rho-interacting, serine/threonine kinase 21) [Source:HGNC Symbol;Acc:1985]
Coordinates
chr12:120159114-120166411:-
Coord C1 exon
chr12:120166307-120166411
Coord A exon
chr12:120159255-120166306
Coord C2 exon
chr12:120159114-120159254
Length
7052 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTGGCCCTTCTCCCCACTAGCAA
3' ss Score
6.14
Exon sequences
Seq C1 exon
CTCAATGACCTGGAGAAGAAGCATGCTATGCTTGAAATGAATGCCCGAAGCTTACAGCAGAAGCTGGAGACTGAACGAGAGCTCAAACAGAGGCTTCTGGAAGAG
Seq A exon
GTGAGTGTGAAATACCTGGGAGAAGGGCCAAGTGGATTTTTTTTTTCTTTTAATAGGCTTCTTTTTTTTGGAGCAGCTTTAGGTTCACAGCAAAATTGAGCAGAAAGCACAGAGAGTTCCCACATACTCCCTGTCTCCTCCTCCCACAGTGTCCCCAGCTATCAACACCCTGTACCAGAGTGTCCATTTGTTACAATCAATGGGCCTGCACTGACACATCGTCATCACCCCAAATGCATAGTTTAAATTAGGTTTGCTATTGGTGTTGTATGTTCTATGGGTTTTGACAAATGTGTAATGACAGTTATCCACCTTTACTGTATCATACAGGATAGTTTCACTGCCCTAAAAACCCTCTGTACTCTGCCTGTTCATCCCTCCCCACCCTCAACTCCTGGCAGCCACTGATCTTTTTGCTGTCTCCATAGTTTTCCCTTTTCCAGAATGTTGCATATCTGGAATCACACAGGATGTAGCCTTTCAGATCAGCTGCTTTCACTTAGTCATATGCATCCAGGTTTCCTCCATGTCTTTTCATAGCTGGTAGCTCATTTCTCTCTGGAGTCTTTTTTTTTTTTTGGTCTTGCTCTGTTGCCCAGGCTAGAATGCAGTGGAGCAATCACTACTCACTGCAGCCTTGACTTCCTGGGTTCAGGTCATCCTCCCACCTCAGCCTCCTAAGTAGCTGGGACTACAGGTATATGCCTCCATGCTCGACTAATTTTTGTATTGTTTTGTAGAGATGGGGTTTCCCCATGTTGCTCAGGCTGGCTGGTTTCAAACCCTTGGGCTCAAGTGATCTACCTGTCTTGGCCTCCCAAAGTGTTGGGGTTACAGGCATGAGTCCCCGTGCCCTGCCTGGACTTGTAAACAAATTTCTTTAAAAGATTTTTTTATTTCAATAGCTTTAGGGGTACAAGTGTTTTTTTGGTGACATGGGTGAATTGTGTGGTGGTGAAGTCTGGGCTTTTCGTGTACCTGTCACGCAAATAGTGTATATCGTACCCGATAGGTAATTTTTCATCCCTCACTCCCCTCCTCGCCTTCCCCCTTCTGAATCCACAGTGTCTATTATACCACTTGTATGCCTTCATACTCATAGCTTAGCTCCCACTTGTAAGTGAGAATGTGCAGTAGTTAGCTTTCCGTTCTAGGTGGAATTTTGAAATTGACAATTTGTCAGATCCAAATTAGATATTTTGAAATTAGAATTTTCAAGTAAGAGTATGGGGGTCATGTAATACTTGTCTTAAGGTATTTAACACATTAAAAGACTATGTCATGAAGGCCAGAGGGTCTCTGTCATTTTTATCCTTCTATGTGATGCTTAATGGAGTGTCAAGCACATAGTAAGTGTGTGCCAAATAGAAGTTTATTAAATACATGGGTGAATGAATATTGAGTTAAATTGTTCTTTAGAGCTAATATCCAAAGTATATTAAGTTTCATGCCGATAGGACATCCATGCAAATTAGCTTCCTGCACAGGGCAGAATTTTATCAGATTATTCTGAGTACCAAATTTCATGAAGGTTTTTGAACATTGGGTAATTTAGTTAAAAATAATGTGTGCCCTGCTTTTGAAGCATAATAGACAAGCTCAGACTGATCTTCTAAACCCATCCCTTACGTGATGGCTGGTACCTTTTCACAGAACTCTGAGAACGGCTATTTAAATTGATGACTACCTCCCACTCCCCAACCAGAGCCCTGTGTGTTGAATCACTGATGATTCCGCTTTGTTCTTTAGGATTGACCTGCAAGGACAAATGCACTTTATAATGAAAAATTGGACTCCAAAGAGTATTCTGTTTAACCCTTAGTGAGCCTGACAGTTTAATTAACCAGAATGCCCTGTTCTGGCTGATGAGGTTTTGTCACGTGATACCCATAGCTCCTGAGGCACTTTGCTGATAGAAATAATATTGTTATGCTGTTAAGTTTGAAAAGTATAGTGACATTTTTGCGGGTGAGTATAAAATATTTTATTGAATGATACTTTAAAAAATATGGGTGGCTGAGGCGTGAGGATTGCTTGAGGCCAAGAGTTTGAGACCAGTATAGGCAACATAGTGAGACCCCATCTCTACAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGCCAAGTGTGGTGGTGTGCAGTTCTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATCACTTGAGCGCAGGTGTTTGAGGCTGCATTGAGCTCTGATGGTACCACTGCACTGTAGCCTGGGTGACAGAGTGAGAGCCTGTCTCAAAATAAAAATTAAAAATTAAAATGAAAAATATGGGTGGGAGTTTGAGAAAGTTCTAGAAATGGATGGTGGTGGTGGTTACACAATAACATGAGTGTACTTAATGCCACTGAACTATACACTTAAAAAATGGTTAAAATGGTAAATTTTATGTCGTGTATTTTGCCTCTGTAAACAATTTAAAAAATAAAATTAATACTAAACACACACACACACACACACACACGTATATTTGGTGAACACACATAGGAATTCACCCCGTGGCCTTAAGAACAACACTACAGTGGAAATGTTAAATGTACCTCGTGGTCAAATAGAGAATTAGGGTCTTTTATCTGCAGTGAATAGACAGTGTTCCCACTTAGGCACATCCTGCAAACAGAAAGAACAGAAATAATCAATGCTCTTGCCTGTCCTATTTTCCTTCTGAGAGGGCGAGTTGGCCCTGACAGCCCAGTACTTTGGTCCAAGGTTATGTGGTGAGTCAGTGACGACTCTAGGAATAGAGTGCCGGGATCCCAATTCAGTTCCCTCCTTCTCACTTCTAACCTACATGAGAACATTTCCAGTTTCCCAGGATGTTCCTCACAGAAAGATTTTTGAGCACAGACTTCTGGCTGACATTGAGCCGGAGGCAGATTTCAGTGACAGTTGAAACCATTCTGGAACAAAGAATGCTCTTTATTGTCCACATTGTGATTGGGCCTCCTGGTTGGTGTGTGCTGTATAAGCATATGTGCCCAAGGCTTCCACCTAAGTATCCTCTTCGTAGGTGCGGAGACTTTTATTTTTTATTTTTATTTTTATTTTTTGAGACAGAGTCTTGCTCTCTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCACCTCCGAGGGTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGTATACACCAGCACTCCCGGCTAAATTTTTTTGTATTTTTAGTAGAGACAAGGTTTCACGATGTTGGCCCAGCTTGTCTCCAACTCCTGGCCTCAAATGATCCGCCCACCTCAGCCTCCCAATGTGCTAGGATTATAGCATGAGCTACCATGCCTGGCCTATAAGGAGACTTTTAAATGGAGCCAGAATCAAAGTCTCAGAATTGAAAGAATTTTTATATCATCCAGTCTGAATTTCCAGCACTATTCCCTTTATCCTTGCTCCTGACAAACTTTACTAATGGATCTTTCACATTTTTCCTCCTGGGCCCAAAATGGCTTCAGAAGCTTTCTCAACATGACACTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGACTGGAGTGCAGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCTGCTATCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCACGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTCCAGGCGTGAGCCACTGCACCTGGCCAACATGACACTTTATAGCCACTATCTGTTCATTGGAAGTAATATCAGTGATCAAAGTCCATTTGCTAGTCCTGGTCAAATTCATCTCTCATCCAAGGTAGAAGATCCCTTCCCCAACGCTCCTCATAGGTAGGCCCCGTTGAACCTTGGCCTAAATACTTACAATGACTTTGGACATCCCAACCCATTTTTCAGCAACTCTCATTCTTAGAACATTCTTATTTTGAACTAAAAACCTTCCACTTTTACCTATTGGTTCTATTACATTAAAACACATGAAATTAGAAAGTAGTCTGATATCTCCAACCAAAATGGGAGATTAATACTGATTAATAGATTACTTGATTAATAATTAAAATAACTAATGTTTAATTAGCACTTACCATGTGACTGACTCTCTGAGTACATGAATTAACTCTTACAGTCCTTGCAATGTTCCTGGGAGATAACTAGTTTTATTATCTCTGTGACAGTCAACTAGATATCCAAATAGCTCTCCCACTCCAAATTGCCTTCTCTTTTATTTTTTCAAGTATTTTTGTAGAGACGGCGTCTCCCTATGTTGCCCTCAAACTCCTGGGCTCAAGCGATCCTCCTGCCTTGGCCTCCCAAAGTGCTAGGATTATAAGAGTGAGCCACTGCACCCGGCCACCTTCTCTTTTTTAAGTGAAACATTTTAGATCCCCTCAAGCTTTGGATGTTCTTTTCTGGTAGATTTGTCTTTCCACAGAGAGTTTCTACAAGTCCATGTGGTCTGAATAGCACTGAATACATTGGGATCTTTCCGTCTCCATACTGGGCTCTAAACCTCTGCCAATTACCTGTGCTCTTTGGGTAGTTTTGATCACATCATTGACACCACTGGTCTGTTAAATCACTACCTGCCCTTCCACAAGTTTGCTTTTTCTTAAAAACATCTTTATGTTCTAGATTTATTCCATTGACAATTTAAAAAATACCGCCCTACTGAAGTTTTTCTTGTTGGTCTTGATCCATTCTTCCAGCCCACGGGGGTTGTTTCATGCTCTTGTTCTATCATCCAGGCCCTTTCTTTTTCCTCCCAGTTTCCTGTCTTTTTCCTTACAGTTTCCTCGTGAAATTGTTGGACAGGTCTAAACACACAGCTAAGATCCCCCTTTCAGCCTAACACTGGCCCATGAATATACCTCTGTTTGCTTCTTTCTGGGAAGCAGGTAAATGCTTCTGAAAAACATTTCATAGAGTACAAATGCCCCGCTTACTTTTTTTTTTTTTTTTTTTTAATGTATAGGGAATAACCAGCCTATTTCTTGGAAAGCTAATGGACAGTTGATGCGTTTATTCTAGAAAAATATTTTGGGCTCGGCTGTCACCAAACAGATTCTCGTCCCCAGCACTTGTTTCTCTGGTTTCTGCCTAGTAATTAATGTTGTCCTAAAATAGTGGGAAGAAACTAAAGAGGGTAATTTGCAGAAGAAATCACTCATGCTGCGGAGGAGGGTATCTTAGCTGTTTCTTTCCTTTTTTCCTGTATTTTAGGGGGCTCTGTGGTTTGATTGAGAAATTCCAGATTACGCACACGGGCCAAATGATTTTTTTTTTAAATTTTCGTTTTTATTTTTTTAGAGACAGGGTCTTGCTCTGTCGCCCAGGCTGGAATGCAGTGGCATAATCATAGCTCATTGCCACTTCGAACTCATGGGCTCAAGCGATCCTCCCACCTCAGCCTCCCAGAGTCCTGGGATTTCAGGTGTGAGCCACTGTGCCTGGCCCCAGGTGATCTTTAGTTGGTAGCTCTTCCTTTGTGGCAGTACTGTTAGGGAAAGGCAGACGGGAGGATGAGAGGGAGCACCTTAACTGAATGGAGGGAAGAAAGAAGGACAAAGGAGATGGAGAGGATAAACATTCAATAAGCACCTACTGTATACTGGGCACTTTGTTCAATATGTCATCCAATGAGGCAAGCTAGTATACCCACTTTCAGATGAAGAAACTGAGGCTCTGAGAGGTGATAAATACAGATTTTAACAGGTATCAGTGATATGATAAGTGTAAAAGTCAGGATTTAAACCAGGGTCTGTAAGAATCCAGCATCCAGGTCTTTCTACTGCAACACGATGCCTTAGGGAATCAGCTACATGTTAAGAGGAAGGGCAGGTGAGGAATATAAATGGAAAGAAAAACAGAGGTAGAGAGAAGCAAAGAGACAGAGAGGGCCAGGAAATGCTGAGATTATCAGTGGCTCTGGGCCTGCTGGGATGGAGGAGTTTGGGGGCTGCCATAGGCCTTTTGGAATCTCCAGTGATGATGTTTATTGCTTTGAGTAGCTCTCTGTCCCTAAGTCTGCAGAGGACCCAGGCTACCAGGGAAGAGATTATTTGGGCCACACTAAGTGTAGTTAAGCTATAATCCAGGGTTTGGATAAAATCAAGCACTGTCTCATCAGGATGCCTGCTCTCTCCTGCTTTTTTAGAAACGGATGCATTTTAGGAAAAAGAACCACAAAACCAGCGTCTTTATAGCCTGTCCTATTTTCTGGTTAACTTCCATTATAAAAATTGGAGCGAGATTTGCAGCACAAAACTATTTTCAATATACTTAATTGAATTTCTTTTCTGGGTTTTACCAACACTCTGTACTATAACTGGGATCTTCTTCTTTTCCCCCAACGTTGTAGAAATATGTCTCATGATTGTGGTTATTCATGTACTTGTTGGGGTCTCTTACCCTAATGGGACCTTTATTAAGTAAGGGATGATATGATTTCTCTTTGTGTATCCCACACTGCCTGCATGGAGTAATTTCTCATAGCAACAATTAAGATCTTGAAAACAGAAAATAAAGACATTGGAACTTAGTTGTCATGGCACTGAGTCGAACTGCCTTAGATGTCAACTCAGATGGCTCATGCCATCCAAAATATCCTCACCTTAATGTACCAAAATATCCTCAATTGGAACTCTGTCTGGGAAGGCCATCCCTGCAGCCTGGACTTCCTGTGACGGTAGGGATCCTCGGACTTGTTGGCCAGCAGAGGTTTCTGTGCAAATTCATTTTAACTGTGCTTGCATCCTTTTGGAATAGATGACAATTGGTAATTCTGAATTGAGATGATTTCAAAAGCTGTACTTCTGGTGCCATGCCTGAAATTAGTTTGAAATAGGAACAGCAGGGGAACAAATTGTATTGTGTGCAGTATCAAGCATTTCCCTGGCCCTTCTCCCCACTAG
Seq C2 exon
CAAGCCAAATTACAGCAGCAGATGGACCTGCAGAAAAATCACATTTTCCGTCTGACTCAAGGACTGCAAGAAGCTCTAGATCGGGCTGATCTACTGAAGACAGAAAGAAGTGACTTGGAGTATCAGCTGGAAAACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966-CIT:NM_007174:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)