BtaINT0038688 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57960861-57965809:+
Coord C1 exon
chr17:57960861-57960965
Coord A exon
chr17:57960966-57965668
Coord C2 exon
chr17:57965669-57965809
Length
4703 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCGGCCTCTCCCCCCACCAGCAA
3' ss Score
6.85
Exon sequences
Seq C1 exon
CTCAATGATCTGGAGAAGAAGCACGCCATGCTTGAAATGAATGCCCGAAGTTTACAACAGAAGCTGGAGACAGAACGAGAGCTCAAACAAAGGCTTCTGGAAGAG
Seq A exon
GTGGGTGTAAGATGCATGGTAAATAGAGCCAGGCATACTCTCAGAAGTGAACACTTGGCCTCAGGTGGGCAGGTCCAAACTAAGAAATTAGATTTCAAGGTTGAAATTCTCAAGGAAGAGTAAGGTGGTCACTGGGTACTTTCTGGAAGGTGTTTAACACGTTGAAAGAACATGTCAAGAAGCCCTGGGGCCTCTTTGTCATTGTGTCCTTCCAAATAGTGCTTAATGGTGTGTCAAGCACATAGTGAGTAAGTGCTAACTGGAAGTTTATTAAATATGAGGGCAAGTAGATATTGAGTTAAATTGTTCTTTAGAGTTAATATCCAGAGTGTATTAAGTTTGAAGCCTGATGAGCTTCATGCACGGGACAGAGACCTGATCAGGTGATGCTGAATGCCAAATCTCATGAAAACTTTTGAACATCCAATTAATTCAATGCAAAAAAAATGACACCCTGCTTTTGAGACACAAAACAAAAAGTTCAAATTGATCTCCTAAACCAGTCCAATCCTTATGTTAGTTATTTCCTGTACCTTTGAATAGAATTCTGAAAATCTCTGTTTAAATTGAGGACAACTCCCCCAACCAAAGCCTTGGTTTGGCTGAATCACTGATAATTTGTCTTAATTCATTAGAATTGACCTGTCAGGACAAATGCAGTTTATAAAGGTATTTCACGAGAAGTTAGACTCAAGAGTGTTCTGTTTAAGCCACAATGAGCCTGACAGTTGAATCAACCAGGTTATCTGTTCTGGTAAATGGAGCTTTTACTGTGTGCTTCCTGTAGCCCCTGAGAGGCTCTGCTGGTAGAAGTATTGTAACTATGCTATTAAGTTTGAAAAATGTGGTACACATTTTGCAGGGGAGCATAAAATGTTTTCTAGAATGACTTTTAAAAATATAGTTGGGAACGTTCTAGAGATGGATCCATGATGATGTACAACCACGTGACTCTACTTAATGCCACCAGTCCTGGCAGTCCAGTGGTTCAGATTCCATGCTCCCAGTGCAGAGGGTATGGGAACTAAGATCCCTGGTTAGGGAACTAAGATCCTGCATGCTGTATGGTGTGGCCAAAAATAACACAAATGATTAACATGGTAAATTTTATGTATATTCTACCACAACAAAAAAGTTTTTAAATAAAATCAATATTACACACAGGTAGAAAGTTCACCAAAGGTGACTCTCAGAATATTATAATAGAAATTTTTAAATCTCTCTGATTGTCAAATAGAGAATGACAAAAGATAGAGAATGATCAAAGAATGGTCTTTTATCTGGAATGACTAGGCAGTGTCCCCACTAGGCAGTGTCCCCACTTTGGACACACGTTGGAAACAGGAAGCACAGAAATAATCAGTGATCTCGCCTGTCCTCTTTTCCTTCCGAGGAAAGAGCGTTGGCCCCAACAACTCTGCTTTGGTCCAAGGTTACGTGGTGAGTCAGTGGCAACACTAGAAATAGAAGGCTGGCATCCTGATTCAGTCCCCTGTTCTCACTTCTAAAACTACTGGGGAACATTTCCAGTTCCCCTGTCTGCACCTCACAGAGGGCTTTTTGAAGACAGACATCTGGCTGCGCTGGCTTGGAGGCAGATCTCATTGAGACCTGAGAGCACTGGGAAACAGTGATCTTTACCATCAAGGATGCGGCTGGCATCCTGGCTTGGGGTGGGCCCTGTGGCAGCAGGTGGTCGGGGGCTCAGCTTGCCTGTCTTGTCCATTAGGTACAGGTTCTTGTACATGGAGCCAGAATCAGAGTCTCACAGTTGGAGAGAATTTTTGTGTGTCATTTAACACAAATTCCTAGCACTTGCACCACCGTTTCTTTTACCCTTTCCCTGGCAGACTTCAGTAACAGAGCTTTCTCTCAGATCTTTTCTCTCAGGCCTAAAGTGGCCTCTGAAACTTTTCTGACACTGCTGTTTACAGGCATGACTAGTCCCGACTTGGAAGTAATACCAGAGCTCCAAGTCCGTTTGCTAATCCTGTCAAATAATCCCCCTGCCGAGGTAGAGAATCCCTTCCCCAGCCACCCTCACAAGTGGGCCTTGGGGCACCTGGGACTCAAGACTTAAAGGGACTCAAGATTGCCCAACTCATTTTTCTGGCAACTCTAACTCTTAGAAAGTCCTTTCTGGTTTTGAACTAAAGCCTGTAACTTCCAACCATTGGTTCTATTACAGCAAAACATTTGAAAACAGGGAGTAGTCTCATATTTCCAACCAAAGTAGGAAGTTAATATTGATTAATGATCATATTACTTGCTTAGTAATAAAAATAACTTGTTTTTCTTTTTTCTTTTATTATTTTTAAAAATAACTCATGTTTCATTTGGCACATACCACATGCCAGATGCCTGAGTACTTTCCATGAATTAGCTCATACACTCTGTGTGATACTTCTGTGAGAGAGCTACTTTTTATTTTATTATCCCTGTGACAGTAGATTTGCTATCTCTTCAGCTCTCCTGACTCCATGTCACCTTTTCTTTTCTAACTGAAACATTTCAAGTCCCACCAGGACTGGAATGTTCTTTTCTGGTAGTTTTATCCTTCCGAACAGTTTCTAGAAGTCCTTGGGGTTTGAACAACACGGCCCCACCACTACCTGGGCTCTTTGGGTGGCTTATCACACCACTGACACCCATTGATCTGTTAGATCACCACCAGCCCTTCTACATATTTTTTTTTTTTTTTTTTTAAACATCTTTATTTATTTGACTTTTTTTTTTTTTTTTTAATACCATCCTGTTAAGCCTTCTTGTTGGTTTTGGCCCATCCTCCCTGTTACCAGGGGTGTTTCCCACTCTGGTTCTGTCGTCTAGTTCCTCTGCTTCCTCCCAGTTTCCTGTCACTATCATAAAATTGGTGGACAGATCTAATCACGTGGCTGGAGCCCTCCTTTCAGTCTACCACCAACCAGGAATAGCCTCCATTTACCGCTCTCTGGGAAGCAGGTAAATGGTTTTGGAAAACATTTCACTGAGCACCAATGTCACTTACTTGTTTTCTATTGTAGTAAATAAGCAGCCTATTTCTTGGAAAGCTAATGGACAGTTGATGTGTTGATTCTAGAGAAATATTTTGGGCCTGGTTGTCACCAAACAGATTCTTGTCCCTAGTACTTGTTTCTCTGCTTCCTGCCTAGTAATTAGTGTTGTCCTAAAATAGCGGAAGGAAACTAAAGAGGGTAATTTACAGAAGTAATCATTTGTGCTACAGGGGACGGATAGCTCCCTGGAAGAGATTATCTTCGCTGTTTTCTCTCTTTTGTTGTTCTGTATTTTAGGGCGTTCTGTGGTTTGATTCAGAAATTCTAGGTCATGCACCCAGGGCAGGTGATTCTGAGTTAGTATCAGTACCTCTTGCTTTACAGAGGATGGATGGAGAGGGGCTGGTGGAGTAGGTTGGGGTAGGAAGGGCAGATGGAAAAGTGATAGGGGCCCACCTGGACTGCATCGAGAGAAAGAAGGATGCAGGAGGCAGCGCTGAAATTCATCGCGCACCTGCTGTGTGCTGGGCACTGGGCTTGGTGTGTCACCCAGAGAAGGGGGTTATTACCCCCACTTGCAGATGAAGAGACTGAGGGTCTGAGAGGCGGTGAGCTGCCCCTGGCCATAGGACTGATAAGAGTTAAGTCAGGGGACTTCCCTCTTGGTCCAGTGGCTAAGACTCCATGCTCCCACTACCGGGCTTGAGTTTGATCCCTGGTCAGAGAACTAGATCCTACTTGCCACAGCTAAGACCTGGCATAGCCAAATAAATATTTTTTTAAAAAGTCATGATTTGAACCAGGGTCTGGAATGTTCTAAAGCCCAGGTTCTTTTCCATGACACTATGATGCCTCAGAATCAGCTGCCTCTCAAGAGGAAGGGGATTGAGGAGTAGGAATGGAAATGCAAACATCAGCGGAGGGAAGACAAATATGGTGGTGAGGTTTCTGCGAACCGAGGTCATCTGTAGCTCTCGGCCTGCTGGGGCAGAGAGCACTGAGGTTTGCCCTCGCCTGTTGGGAAAGCCCCGTGGTGATGGTGAGCAGCTGTTTACAGCTCTCTGTCCTTCCGTCCACAGACGGTCTAGGCCCCTGGGGAAGGGAGTGTTTGGGCCACTGCTAGTAGGGTTAGATTGGACGCCAGGGGTTGGGTGAAACCAAGCAGTATCCTCTTAGGATAGCTGTTCTCTTCTGCTTTTTAGAAACAGAAGCATTTTAGGTAAGAGCCATAAAGCCAGTATCTTTATCGCCTGCCCTGTTTTCTGTAAAGTTAAAAAAAAAAAAAAAAAAAGAATTGGAGAGAGTTCTCGTACAAAACTATTTGCAATATACTAAACAGAATTTTGTTTTACTAACACTTGTTCTGACGCTGGGATCGCCCCCCCTTTCCCTCGTGGTGGCAGCATCGCCTCCCACCATGGCTGTTGGTGTGCTTGTTGGTCTCTCGCACTGACGCGGCGCCCTTTGAATTAAAGGTGCTATGATTCCCATTTGTGTACGCCACATGGAGAATCGCAAAGTGAGTTCTCTCAACAGTGGTTGAGATAACTGCTCATGCATCGTTGTGGAATATCAGACAGTTGGTCATCCTGATATGAGCTGAAATTTTGGTGCCTCCTCTGAAATGAGTCTGAGTGGGGACAGTGAGAGAGCGCGTTGCATTGTGTGTGGTCTGAGGCTTCTCTCTCCGGCCTCTCCCCCCACCAG
Seq C2 exon
CAAGCCAAGTTACAGCAGCAGATGGACCTGCAGAAGAATCATATTTTCCGTCTGACTCAAGGGCTGCAAGAAGCTCTGGATCGGGCTGATCTGCTGAAGACAGAAAGGAGTGACCTGGAATATCAGCTGGAAAACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963:ENSBTAT00000061505:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development