RnoINT0036611 @ rn6
Intron Retention
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46361352-46367019:-
Coord C1 exon
chr12:46366915-46367019
Coord A exon
chr12:46361493-46366914
Coord C2 exon
chr12:46361352-46361492
Length
5422 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CATTCCTTCCATCTCACCAGCAA
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTCAACGACCTGGAGAAGAAGCACGCCATGCTTGAGATGAATGCCCGGAGCTTACAGCAGAAACTGGAGACAGAGCGGGAGCTCAAACAGAGGCTTCTGGAGGAG
Seq A exon
GTGAGTGTAAACCACCTGAGCGATAGTGTGTGTGTGTGTGTGCGCGCGTGTGTGTTACATACATGTGTGTCACACACCTGTTACATACATGTGTTACATATGTGTTACACAGGTGTGTCACATACATGCGTGTTATATGCACATGCACGTGCCCATGAGTGTGTGTTACATGTGTGTGGGGAGTTATGCGCCTGTGTGCTTACACATGCAGAGGACATAGCGAGCGTGTTGGTGACTTATCTATTGCTGTCCACCTCATTGCCATGAGACAGAGCCTCTCACTGAAATGGAAACTGGGCCTTTTGACTAGACTAGTGAGCTCAAGAGATCAGGAGCCTCTGCCCCCACCCTGGGGTGGCGGGCATCCACAGCCACACCAGCATTTTGGGCGGATGGTGGGAATTCCAACTCAGGCATTCCTTCTTGCACAGGAAGTCATTTTTACCCACTGAGCCATCTCCTAAGTACCACCCCTCCCCCGCCCCCCATAAGATTTTGAGAGAGGAAATTCGTTATGCTGTCCTCAGATGATTGGAGTCAAATTAGACATTTTGGAACTAAAATTTTTGAGGTAGAGTAAGGGGAGCATATGACACTTTCGAAAGCTTGACAGTAAAAGAGTGTCTCTCGGAGGCTAGACAATCTCCCTGTGACTTGTGTCTTCCGATGTGACACTTCATTGAGACCGACGTTCATCATGGTAAGTGTTTACCCAGCTCACTGAGCGATGGCTGAGCAAGTGTGTGTCTGCCTGGAGCCTCGAAGCCTGGAGAGGGCAGTGGCAGGGGACAGGTGTTGCTTTAAAGCCTGAGAGCCTGCGGACATTCTAGCTCTCTAGCTGTACTGAAATGCAGCTGGGCGCTTGGGGAAGTTCAGGAGATGGGTGGTGGTGTCATGTGTGCAGCAATGTGAATGTTCTTAATACCACTGAACATACATCTATGGCCAAGACGGGGTGACACACTTGCTGGGATGGGATCCACGGCAGTGCAGTGGCTTGTCTGTGACCCCAGTGCTGCTGCGGCCAAGACCAGAGAGTCCTTGGTACTCTGTAGTGAGCCTTCCAGCTTAGCTGAGACAATGAGCACCCAGCCCCAGAGTTAAGGTGGAGCCACCAAGATGGCTCCTTACCACCCGGTGACCCGAGTGCAATCTCTGGTCATGGTGGAAGGAGAGAACCAGCTCCCCTACACACAGAGGAGGGAAATAGCTAAAATGGTCTGGTGTGAAAGAGACAGTTTTTTCTTAGCATTGTTTAAAAAAAAAGAGAAAGAAACAAAAGGAAAAGAATGCAAAAGAAACATTAAAGTGATTAATCTTATGTTGTGTAGTTTGTCACCAAAAGTTAAAAATAAATTTCATACATGCAAACACATATGAATGGAATTCTTCAGATATAATGAAATTTGCTGTATCCTGGGTTGACTATTCCCTACTAAAATACTTGGAGCTGAAAGTATTTTGGATCTTAGAAGTACTGGCATTTCAAAGATCTCTTGGGGATAGGACCCAAGTATAAACACGAGATTCTCTTACATCGTATGCACCATGCACACAAAGACTGGCAGTGCTGTTAGACTGTGTTTGCATGTGGTTCTGGGGCTTCAACCCAGGGCCTGATGCATGCTGTAGCCCTGAGCTGTACCCCAAGTCTTTGTCTAGTGTTTCTAACAGCCCACATTTTGACCGTGACCATCACATGAGCTCAGTTGTGGCATTCTCTACTCAAGAAGTTTTGGGTTTGGGAGCATTTCCAACTTGGGCTTTCGATACTGGGAGTGCTTAACCTGTAATAGAACCCATCAATCTACCAGGTGGTCCTTTCTCTGGGATGAATAGGCAATGTTCCTCCATTAGGCACATGCCGGAAACAGAAGCAGGGCAGACATAATCGAGGCTCCTGAATGTCCTATTTCCCATCTGCAGAGGGTAAGCTGGCCCCGCAGCTCCGAGCTTGGTCCAAGGTTAAATGGTGACTCAGTGGCAAAGACAGGAATAGCGTGCTGAAGCCTGACTCAGCCCCACCTTCTCGGGGGCTGAGAACATTCCGGATAGATGTTTGAATAGACATCTGGACAGCAATGATCTGAAATGGAACTCACACATCATCAGAAACCATTATAAGGCAAAAAAGAGATTAACCCTTACCAGCTAGGACGGTTGCGATCCTGGGTTGTGGTATGTGCTTCATAAGTTTGGCCACAACCAAAGGGTTGTCCTCAGGGGTCAGAGACTGAAAAGAGACAGACTTGGAACTTTTAATGTCAGCCAACCCAAATTCCTCTCAGGCCGACTTTCCGAATGGACCTTACAGTGGTTCTTTCTCCCACCTCAGCCCTTGGGAAGTCATTCCGGAGACGAGTGTCCCTCCGCCCATTGGTTCGTGTCCCACACAGGGAGGAAGGTCCCTTCCACTACCAGGGCAGCTGCAGGGAACCGGAGACATCACTTCCCTAGTGTCCAGCAACCCTCAATTCCTAGACAAGCCTTTACTTCGAAAAGCCTACAGCTGCCAAGTACTTTGAAGCTACTGTTGTATCAGGAATTAATATTAGTAGTCAAGTTGGCTTTTATTTTTATTTATGTGTTTGTGCCTGTCCATATATGTGCGGGTGCCTATGGGAGCCAGAGAGGACATTGGATTCCCCTGAACCTGGAGTTATGGGCAGTGGTGAGCTCCTGACGTGGATGCTGGGAATAGAGCTCCATGCCTCTGGAAGAGCTCCACTGAGCTGTCTTTCCAGCCCCAAGCTATGTACTGGAATGCGACTTTACTGGCAGAGTTGTTAATTGCCTAAGGCAATTAATTAGTTAGGCAACTAATTATTAATTAATTAGTTGTTAATTGAACAAGGGCTGGGGTTCAACCCCCAACAGTATAAAAGATAAAATAAAAGTCCAACACACAAAACAAAAGCCAACAAGTCAAAATGCGCGTGTGCACGCATGCACACACACGTACAACAAATGTCCATCACTAACACAGTTACTGCTCGCCTGGTGTCTTAGTACCGTGCTTGAATCTGTGTTGTTCTTGCAGGAACCCTATGGGACACCTGTGTTCTTTCCTGTCTCGTGCATGGTGCTAGTACAGTCTGCATGTGCTCTTTCTGCAGTGGGGGATTTCCACCTCTCCCTTTAGCTCAGCAAGTACTGACAGTCTGAGTGACCACGCCATTGAGTCCTCTTAACCTATGAAATTACACCTATCCATCCGCAAAGTATGTTCTCAGACATCTTCACGCCCATACTTAGTTGATGGTTTTGAAATGCTGCCCTACCAAACTGTTTCTTCTTTGCTTCCTTCGACCCATCCTTCCTGCTCCCTGCTCATGCTCCAGTTCTGTCACCAGCTGCCCGCGTCACCCTCCCAGCTCCCTGCCACTCTCATAAAGTGCTTGGACAGGTCTAAGCAGGTCACCAAGGTCCACCTCCCAGGGGAGCTCTGGCCCACAAGCACAGCCCGCTTTGCTTCTCTCTGGGCAGTGGATAAATGGCTTTGAAAAATATTCCACAGAGGACAAGGATCCCTCTCCCCTGGCTTTTATTATACTAAGTAAACAACCCATTTCCTGGTGGGCCAATGGAGGATCACTGTGTTTAGTCTAGAGAAATATTTTTGGCCCAGCTGTCACCAGGTGAATCATTTGTGCCCGTGACATGGTTCCCTTGGTTCCTGCTTGCTAATTAATGTCCTAAGAACAGTGGAGAAATCTAAGTAAGGGAATCACTTGGGACTTTACGGACCAAAACCACCCTTTAGGGCAGCATCTTAACTGGTTTCTTCTCTTCCTTTTGTTTAAATACAGACGTCAGTTTATTTTAGAATTCTAAGCTACGCACCTCAGGAGTGACTTCCCTCCCTGTTGGGACAGACACCTGACTGAGACAACTTGCAGGAGGAGGTGTTTATTTTCGCTCACAGCTTCAGAAGAACCATCCATCTTTGTGGGGAGGGTTTGGAGGAGTGGAGCCATGGACACCATGGCAGCCAAGAAGTGGAGAGCAGGAGGTAGGAGAGGGCTCAGGACAAGACACAGCCCCCAGGGATGTGCATCTTCCAAGCAGACCACACTTCCTGTCACTTAGCCCTCTCCCCAGGCTTCCAATGTCATACTGTGACTCCTTTGAAGGCCCACCAGGCTGGAGCACCTAAGATCTAACTGCCCCAGGAATTCATCTCAAAGACACTCAAACACGGGTATCCTTCCCAAAGCAGAGAATTGAGTTTAGCCATCTCACGTGCTAAATGCAGCTGGGCTGGGAGGAAAGGACTGAATTAGAAGGAGAGAAGGAAGAAGGACAGACATAAGGACAGACACAGAGACTACCACCATCTATGTGAGCACTTACTGTGTGACAGACACTGTGTGGAGTTTGTTACCCAGGGAGGCAGGGTCTTACACCCACTAGGGAAGAAGGAGGCAGGGCAGGGTGTCTGTGATGAAGTCAGGATCTAAGCCAGGATCTAGACGATCGCAGGGTCTAGCTCGATGCCTCTGCTAGTCATCACCAGAGGAATGGGGAGCAAGACATAGGCAGAAATCAGGGAAGTAAGAAGGTGGGGACCAGCCAGCTCTGGGGCCACTGTGTCTCTCATTGTGTTGGGGTTGGGGACTGGGGTGTCAGCCTTGGGCTGTCTGAAAGCACCCACGGTGACGTTTATTTTGCTTTCTTACCTTGCTTTCCCGTAGTCTGCAGAGTCTAGCCCACCGGGGGAAGATGTTCTGGGGCCGCAGTAGCTATGGTTACAATATAACCCGAGGGTACATGAAATCAAGCAGGGTCTCCCCGGATGAAGCACGTTTTGACTTACATTTTAATTAGATTCTTCAACACAAACTCTCTCCAATATATGAAACTGATTTCCCCTAGTGGGTTTTAGCAGCTCCTGTTGTATAGCTAGATTCTTCTTCCTTCCTCCCTACACTGTAGAAATGTATCTTCTAAATTGTGGCTGTTTATATACTCAGGGGCAACCCTCAAGTTACAGCTGATGTGGCTTATCTTTTGTGCACACCACACAGCCTTGTCAGTGGCTTTTCTGATCACCCACTGAGGTCCTAGACACCCCCGAGTGGGACAAATGGAACTGATTTGAGCTGCTTCGCTGTCAGCTCTGGACTGTGCTCTGAGGTGCCAAAATGGCTGCCTTTGTAACACAGAATGAGTGGTCCCGGAGTTCTGCTACCTTGCAGTGTGAGATTACAGGCATGTAGCCTTTGGGGGTTCCTAAAAATCTTTTTCAGCTGTGCCCTCCTCTCTTGGAAGAGAAAACAGCCAGCAAATTCTGGAAGGAGTTGCTTTCACAAAGGAACTTCCTGTGTCATACCGGAAGTCTGTTGGGGAATGGGAACCAGGGTGGGAGCGGGCTGTACCTTGTGCGGCGTCAAGCCTCTTGCCATTCCTTCCATCTCACCAG
Seq C2 exon
CAAGCCAAGTTGCAGCAGCAGATGGACCTGCAGAAGAACCACATCTTCAGACTGACACAAGGGCTGCAGGAGGCGCTGGACCGGGCGGATCTGCTGAAGACCGAAAGGAGCGACCTGGAATATCAGCTGGAAAACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143:ENSRNOT00000041281:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]