MmuINT0037312 @ mm10
Intron Retention
Gene
ENSMUSG00000023959 | Clic5
Description
chloride intracellular channel 5 [Source:MGI Symbol;Acc:MGI:1917912]
Coordinates
chr17:44270491-44280168:+
Coord C1 exon
chr17:44270491-44270672
Coord A exon
chr17:44270673-44275213
Coord C2 exon
chr17:44275214-44280168
Length
4541 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCTTGTCATCTTTGCTTAGATT
3' ss Score
7.02
Exon sequences
Seq C1 exon
CCCTTGAGAGAGGCTTGACAAAGGCGCTGAGGAAGCTGGATGACTACCTAAACAGCCCTCTGCCAGAGGAGATTGACACCAACACCCACGGGGACGAGAAGGGGTCCCAGCGCAAGTTCCTGGATGGGGATGAGCTGACCCTGGCCGACTGCAATCTGCTGCCCAAGCTGCATGTGGTCAAG
Seq A exon
GTAAGATAACCTTTTAATAACATTTGTTTATGAGGAATCTGGACAGCTACTATGTGTCTTTTAGGACACTCATGCTTTTTCTACCCTTCACTGAGGATAAGGCTAACCCATTGCTCAGCAGCAGGGTAGATTTATTACTTCCAGCTTTAGTACTGAGCTAGCCACATAGATGTTCCTCCAATCAGAGCACACACCACTTTGAGGTAAGGCCACTTAGCTGAACATCTATGCATAAGTGTCCAACTGCCCTGGGTTAAAACTGGGGAGAGAATCACTTGCTTCTAGGGCAGGCCAATGCAATACTTGACTATGAAGATATTTTGGGCTCAGGGCCAAGCTAAAGATCTCTTGTAGGTCCAGCCAAGTACGTCACTTTGAAGTTATTAATTATTGCAGGCCCCACCCACCAAATTGTGCTTTCTTCTTCTTTCCCTGAGGAATAGGCAGAACCACTGGGGATGCATGATACCTGCTCAGTCACACAGTGTCATAGTGATATAACAGAAAGATCAGAAGACCCAAGTTCTAATTCATCGTTTGCCACCAACTAGCTGGGCAGACTAGGACGAGCCATTTGATCTTTTAGGATTTCATTATTCTTATGCATAAAAGAAGAGGTGTGGATCAACTCCCTCCCCCTGCTTTCTTTTCCTTCTTTCTCTCTTTTCTACTTCAACATGTATGGGCAGCTCACTTAAGCATCCTTTGTCAAAGTAGGCAAACAGAAGACACTCACAGGGTCTACCTCATTCTCTGAATGTCTTGGCTCCTTCTAGCCCTAAATGACTAAGTTAACCCCTTGTTCTTGGAGACAGTTTAGCAGGTTTCTAGTTCTGGGATGCTGGTGATCAAAGAGAGGATCTCCTGAGAAGGAGCAAAGGCTGAGCCTGGACTCCTGTCTCCTTGGATTTCTGCTGATCCAGCTTATCAGATTCGGCGACCTGGCAAACCTCTGCAGTGCAGAGAGCATGAAAGGAAGCCAAGGCAGTTTGGCCTCAGATGCAAAATATAATCCAGGCTATAGGAGCTAACTGCTTTCATATGACACAGAAGATTCAGAGCATGAATATGCAAGTTCTTCTGAATATCAGAGCTCAGTGCACCCTCGATCCTACCTGTCTTCCTTCTTATCTATCCCCATTCCAGGATGCTGAGTGGCTATGGCTCACACTTCACTGAGAGCCTGGTCCCTGGATGGTCTTTTGCTGGCTCAGTATAGTGGCCATTTCCTCTGTGAGGGAACTTAGAAGAAAGATCCACATTTAAATGCAAATATGGATTCTTTAATCCCATGTCTGCTGTTTTCAAGCTAATAAAGATAACCCAGAACACATATTCTAGTTTGCTTTTCTGTTGCTCTGATAAAAAAAAAAAATGGCCAAGAGCAGCCTGGAGCTTTCACGTCCCAGTCTGTCATGGAGGGAACTCAAGGCAGGAACCTAGAGGCTGGAACTGAATCAGGGACCAAGGGGGAATGCTTCTTACTGGCTTGCTCCCCTCGGCTTGTTCTTGACCTTTGTTGTATGGCCCAGACCTACTTGCCTAGGAATGGTACCACCCACAATGGGCTGGGCTCTCTTATATCAATTAACAATCAAGAGAATGATCCCAAAGACATATCCACAGGGCAACCTGACACAGTGCCTTCTCCCAGATGACTCTAGTTAGTAAAGTTGACAAAAACTAACCAGTACAGTTCTTACTTAGCACTAAGCTGGAAACTCGGCTCTACAAAAGACAAGGAAGCAAATGAATAAACAAGAAAAGGAAACCCCAAATTAAATTGCTAGCATTAACAAAATATGAGTTTATCAGTGTAAAATATCAGCCCCAGCCCCTGTTTCTTTGAGATCAGTTGACACAAGGTCTAAATATTGTTGTGCTCAAATTTGAGGTCCTCCAGCTGGTATCTCTTGAGTATTTGGATTAGCAGTCCATGCCATCATGTCGAGCTTTGCACACTATCTCTTAGTAGATCTGCTCACTTTACTGTGCTCCATTTTTTATTCCACCTCGGTAACTCCAGCTAGTTCCTTGGATCAGATCATTATAGTTGCCTAGATTTGTTCTGAGCCAAGACAATCCCTTCTCAAAGACCCCTGGTCAAACTGCAAGGCCCTCCTAGTACAGTGTCCAGAGGGAGGTCTTAGGACAACTAGTGGTTTGTGTTGATTCAAGCCGGTCACACTCATACAGGAGGATAGAACATTGTGGGTGGCTTCTTTGGTACTCATCATCAGAAGAGAATAATCTCGTATCAAGAAGTTCTAAATCTTGAACACTGGGAAAAACAGATGCTCCTGGAGGTTCCCACTTTCTAAGGTGGCTACTTTCCCAAGGAAGCATTCTGGAATTCCAGAGATTTGTTAACATGGAGCCCTGCAGGTGTGGGTCCAGCAGAGATGAAACCCGGCCTGCTGAGGTGAGATGGATAGTTGGCTGTATGGGGAGCTGATGTTTGCAGCCGAGTCCCTGCTGTGTCCTGTTCTTTCTGGGCTGGCACATTGTAGTTGTAGGTGTGTGGGCAAAATAACAGACATGCTTCGATGGCTGCTATAGAGATAAACTACAGACTAACTGGAAAGGGTATATGCCTCCTGCCCTGACATTTAGCCTTGCTGCAAGGTAATAGTAACTTTTCTTCAGAGCCAGACAAACTTTCCTGGTGAGGCACAAGTAGAGTGTTCACAACCCCAATGTCACAAAAACAAACAGACAGACAGACAGACAGACAACAAATTGGGGATAGATGTGGAGATGAGCATAGGTTTTGAGTCATTTTCTAGCAATGGAGAGATTCTATGGAGGAGAGGGGGGGGAATCACAGATTGCTTTCTACACAAGAACATGTGGCCATCCGTAAAACCTGAGACCAGAGACTGGAGTAGTTGAGGTTCATCTGCCCTTTCTCAAAGGGAAGAGAGATGGTAATGCAACAATTTTGAAGGTACCTCAATCACTATTAGAGGGAGAATGGGCATAAGGACAGAGAACCCCTGTAAGATGATAACTTTTTTGAGTTTGCATTAATATCAAACACCCAATGAAACCCTGGGCAGGTGTGTGTAGGGGCCAGTTTCCCTTTCCGCCACAGACAATGACATTTTCAGGTGCTATAGGAGGCAATTCTTGTCTATCTGAATTGGCACAGAGAAGCAGGACAAAGTCAGAGGAACTTTGAAACCGAGGCAGTTTCTTGGGTCTCTCCAGATGTCAGAGCACCAGGGTATCCTTCTGTGAGTGTGGGCAGTAGAAGTCACAGGTTAATAGCTGGCAGTTGGGATCTGGTGGCATCTGAGTTGCAGTGGCTTTTCATCATCTGCACAGGGCTGTGTGGGAAGGAGAGTGAGGGGAGAGCAGAAGCTGTAAGTAATGTTCCTAATTACTCAGTGGGTAGGCATCTCACGATAGTCCCTATAATCCTCAGTGGCTCCTCACCTTCCTAATGCTATGACCCTTTAATGCACTTCCTCATCTTGTGTGACCCCCAACCATAGAATTATTTTCATTGCTACTTCGTAACTGTAATTTTGATGCACACACAGGGAGAGGGGTTGGGTGGGAAGTTTCGTTATATATATCTATATGCACCTTTTCTGATACTGGGATAACTGAAGATACCAAAACTTAGATTCAACTGTTTATCAAAACATTATTATTGAATGTCTGTGCCTCACCTTTCTCATCTGTACATTAGGGACACAAGCCTTGCAGGATTCTTTAGAGATTTAGGTAGCTTTGCACCCAGTTCTAGGTAGCTTAACACAGCACCCAGTGTTGTCAGTTGGGCCAGTGTTGTCAGTTGCCACAGTCTACATAGTCGTTAACATTAGGGAAGGGTCTAGAAAGGCCAAGGCTGTGCTCCCTCCCTGTCCTACTGTTCCTCACAACCTGGGGAGGAGAAAAGGATGTGGTTGTCATCCTTTTGACTCAGGACAGAATGTGTCCTGTTGTTGTACCAGAAGCTCAGAACTGGAATGAGAGATGGGAAGAAAGGTGTCCTCCTAATGGCTTTTCATGCAGCAGACTGTCATTGTCTTCTTGGCATCATTTCCTGTGGACTCCTCATGACCCATACAGCAAGGAAGAAATCCTTGCGTGGCTGAGCTGGGGGTCCCTGAGCAGGAAAATATCAGACCCCATGGTTTGGTGCCCTCTGCCACCCCCAAGAGAAAACAGAGAAAGTTAGAAGCAGAACCCTGGGAGAGATTCTGCTCTCTGCTGCCCCTGCATGACCCTGAGGGCTACAGGAAAGACTAATGGGCAGGTCCCAGGGAGCAGTGAATAAGAGGTCCTTTGTTAAAAAAATATATGAAGAATGTACTGATATTGACACAGCCTTAAAGCAAGAGCAAGGACCTCTTGTTTGCAAGACCCTGGGAGCTTGCAGATATGGCTAGTCTTTCTACCCAGCTTCTCTTGGCCATGCTGTATGCAAACATACCTGATATGCACAGCCACCCATGAAACCATGGTCCCAACACCTCCTAATGTTTTGTTTCCTGCCTTCATGCCATCATTTTCTTGTCATCTTTGCTTAG
Seq C2 exon
ATTGTGGCTAAGAAGTACCGAAACTATGACATCCCAGCTGAGATGACAGGCTTGTGGCGATACCTCAAGAATGCCTATGCACGGGACGAGTTCACCAACACCTGTGCAGCTGACAGTGAGATCGAGTTGGCCTACGCAGATGTCGCCAGGCGCCTCAGCCGATCGTGAGCTTGGCTGTCTGGCCCAATTTCTGCTGCAGAAGAATTCTACTTCTCCCAATGGCTTTCAGCTCTACAGACTCTTCTTCCCCATTGCCTTGGGGAAACATAAAAAAAAATTAGGCCACATCTTACTGGCACCCCTGAACTCAACTCCAGCCTTCTACCTTCTAAGATCAGTGCCATCCTTCTGCCTTGCCCTGCAGGAGCCTGGCAAGCAGAGGACACGGTGGCAGATTTTTTTTCCACCTGCTGGTCTGATCTAGGGTCAGTGTATCTGGGGTCAGTGAATCTGGGGTCAGTTTGCAGAGCTCTCATGGGATTGTCACCGTTCCCTTCTGCCAATATCATAATGCTTTCTCAGATGCGCTAACAACTTGAAATGCCAGCTTCTCTCTCCCCTCGTTCCTCAGCAAATGCAAGGTGATGGACAGATACATCATCGTCAGGGAGAGATCTATGCCTTGATTGGGGAGACAGTGGTTGGGGGGACTCAGCTGGGTGTGGCTCTAGCAAAACAGTTCCAGATGCTCACTATTTCTGACAGTGGGCCAGATGGAGACACCCCCAACACACAATATACCCCAGTTTTCTGGTGCAATATGATTACATCCTGGCCAGCACTGACCCAAGTTTTCCTCCTGTCTCCATTTTGCCACAAAGGCAGTCGATTTATAACTCTAAACCAAGGTGACCCAGATAGGGAGAGACTTCTGGGAAGCAATATTGATGCCAAAAGGCCCAAACAGGGTCTACAGCCACAGGGGTCACTGGCTGAAGAGTAGTCGTCCACTGGAGATCACATGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTGTGTTCTTCAGTGGGTAGCTTTGGGTTTGAGCAAGCGAAGGAAGTGGAGGGATGGGAGGAAATAAAGTTCTATTTGAGTTTGACATAGCCTAGAAAACTTTTAGAGCAGTCTTCTCTCTCATTATCTAAATCTTGGATTGGTGTTACGGCACCCCTACCAACTGTAGAGCAGACTCCAACATCAGCCAAAAATGTCTTCCAGGCTCTTCATAGTCACTTGCAGATGTGGGTTGCCACCTGCCTGTGCCCTGGCTCCCAGTTTCTTCAGCCTCAGCCTCTGATGAAAGAGAAAGTCTATTAATGAATGGTGTGATCGTGGGCTACCTTAGGAAGAAAGCCCATGGGTCTTTCTGACTGGGAAGCCACAACTTGAATTTGGAAATTATGGACTGCCTTGGGCTTGGGTTCATTTTCCTGTCAGCAGGCTCATCTATCAGATTTTCAAGGAAGAGAAAACTTTTTAAAAATTTCTTTATAAACTAATATTTCTCTCTTTAGTAATTCTCCTTGAGTTTTACCTACAACTCTCACAGGGTGTGACCATGAGAACCTAGGCTGATTAGGAACTATGACAAATCAATCACTCATTAGCTCTTCCTCTACCAGTGAGCTAGTGAGTGCCTAGAAGAAATCCATCACCAGGACCTCAACTCCAACAATCCCGCTTCTGTGTCACTGACAGTGGAGGCGAGGCTCCTGAGGGCCGGTAAGGCCCTGGTCTTGGCTCATTGCTCGGGAGGGTGGAGCAGCACAGATCCTTTCCATAGAAATACAACATGGTTTAACCCAAGCAGTCACTGAGCCCTCCTGCCTCTAGGGATCTCCAAAGCAAAGAGTGACCATTGATCCAAGGAGGGAGGAAGCAGGAGGTCTCCCTAGCCCACTGGGGAAGAGGACTCTGCCTGCTAGAAGTTTATAAACCTGAAGGGGCTTTGAAGAGGCAAAATGAGCCGATTCATTTCCATCGCTACAGGAACCTTTCCACGGGCTCTCCATAAGCTACCCCTGGGGATGTTTAAAAGTGTAGCACTGCTGAGGGAACAGCACTTTTTTCTTCAGGGAAGAGCCCTCAATGGGCCTCTCGGGGAAGCAGAACTTCCGGAACCATCCGGAAGGCCGTTTAATTAAAAGAAAACCATGCTGTTCTCCGGGATCCTTCCTAGAATTTACAAGCAGGCAGGGTGAACTCACGCAGCTCACACCCCTATTTTCCAAAGGTGGGCTGGTGTTAAAGATATGAAGACTAGCGTGCATGCTGAGGGGCCTCAGAGGAAGGGGAAGAATTTTCCTCATGTGATGCTCTGAGCCCAGCAATCGGCATGTCTTTTAAAAACAAACTTCCCAAGCCGAGTCGATGTTGTTTCTAGACGGTTCTCCTATGGTTGAGTTAGTTTCACATACATCACAATATTTAGGCAATGTTGGATGCTATAGGATCAATCAGAACCCCTTTAAAGAGAGGCACGATTGTAAATGGGAGGCTTTCCTCAGTACTTTAATGCAGATGTAACTTTAATGTTATCAAATAACTATAATGAGACTAACCAATGTCTTAGGACACAATTATCATAGTATGTAAAAAAAATAGCAATAAAGTCAATGATGATTACCTACCCCACCCCCTCCAAGGAGAGTTTTCTCTGGAGGCTCTAGTTTCTTTGGACCTTGGTCTTAACCTTGATATGTATATGGTTTACCATCTGCAGTCACCCTGTGTTGAGGTTCCAAGTCCCAGCTCAGACCATGTGGAAGGGTTTGTAGTGTGGACTCTACCTGCAGAAATTCTGGATAAGAGCTATTCCGGTAAATGCCAGTCCCCCAGGAAGCATTTGGATGTCAGAGAAAAGGAAGCTATGTTGACAGAGCTATTGTGTATTCTTTTCTCACCTTGGATTGTCACATGACAATCTTGTATGTATGAAACGTTAAGTGCAAAGCAAGACAGACAGACGGGGTCTGACTCAAAATTACTGAGCTGAGTGTACCTACCTATTTAAAACTGCCCACTTCTTAGGTTGATCCAGACAGAAGACATTCTTAGGTTGATCCAGAGAGAAGATGTTATTAACTATCCACAATAAGATAGAAAGTGAATTGTTTGCTTGTTTAGAAATATAATTTCATATTCTCCTGAAAAAAAAGAAAATGTCCTGGTAAGTTCAGGATCACAGTCATGTGTCTATCTCACAGTTTAAATGAGGGGTCTAGGTAGCCTACTGGAACCAAACAAATCAGTTGCAAAGTAGGAAATGGTCACTCAGTTTATTTAGGCAGTCGATCCCAAACTAGTTCTAGCTTCCTGGTAGGTGGCAATGTCCCCACTGGTCCCCTCTAGTGTTGGTGGGAACAAATAGGCTCTCTTTTTTTTTCTTCAAAACCAAACTGTTCCAAAAGTGAAGTTTGGGGCAGAACCTGCTGGTACCTTCTTGTGAGGTTCTTATGAGGTGAAACAAGAACAGTGACTAGAGGGGTGGACATTCTGCAGACAGGTAGTCCTAAGCAGGTTAGAACCATCATGGAATGAAACATGCCTGGCACAGAGAGACGTTGCTGTTGACAAGTTCTGGGGACCTTCCAGGCCCAGGTAAATTGTATTATGAGGGAAGTCAAGGCAGAAGCCGTGTGTCCATCTAATAAAAGTTCACCATCGCTAAAAGAGTTTGCATCTACAATCAAATCCTTCTAGAAGCAGTAGGTGTCTGGTCGGTAGGTACTTCTGGGGTTTCTGTCCATTCTTCCATGGTCTAGGAGTTAGCTCAGCTGCAAGATGAGGCAGGATACTAATGTGGCTTTGCTGGGAAACATGAAACACTAACTCATGATTGAAACTAAATTCAGTGATTCTCAAGGATAACCTTTTGAGATCTACATGTTTCTATCATCCATATTCATATACATTATATCTATATATGATATTACAAAGAACCTTTAGAAAGGGTGAAGGAAAGAAGTGTGCTCATGAGGCCTCAGACTCTGGTGTTGGGAGAAGATTTGTGATCTTGTCTTTGGCCTTGGGGCCCTTCTACAAATAAGCCAATGACTTTGTATCCACTGCTCTTTATCATTCAAACTAACAGCTTGTGCCTGAATTATAAGTGTATTTTATTTTCCCTCTACCAATATTTCCCTCCCAGCCTTGCTGCAAGCTACATTCATCTCATTATTATGAATGAGTATAAATCAAACTGCCCAATCTTATTTAATGTTGTTTCAGGATATAGATCTATTGTTCATTATCACCACATGCACCAGCAAAAATAAAGAAAATGTTATTCCAATATAAGGTTTGACTTAAACCGTACTTTCAATAAAATCAATCTAGTGTTTGGTAAAAACAGTTTTGAAGACATGGTATTTTTGTATATAGCTAGAGATGTCACAACATCAACTGTGAATATATTTATAGGAGATAGAAGGGTAGGATCAAGCTTGGTTATAGAGTGTTTGCTTAACATACGTGAAACCCTGGGTCAGATCTCTAGCACTGCATCAACCAAGCATGGTAGCAAACACTGGTAATTCCAGCACAAGGGAGCTGAAGTCAGGAAGACCAAGGTCAGCTGCATAGCAAACTGGAGGCTGGTCTGAGACCCTGTCTCAAAACAAGTAAAATATTCAGCTGATACTTGAATTTCTCCCCCCTCCACCCAAGTCACCTAGTTTTTTTTTTTAATTTTATTTTATAAGCTGAGGAGTTAACTGATTGGCAATTCTAATACATTGTATGTAGGGACACTCCAAATGATGGTAACATATTTTTTGAGACCTTTAGCTTGGGTGAGAACAGACCTTGCTTTCAAGCCTTACTCAATGTACCACGCCTTTGACTACATACCAAGTCAAGTGTTTTCTACTTATCCTTGAGCCAGCTGTAAATGCATTTCCTGGTCTTGATTGGTATTGACTGATTCAAATAAAGTTGGTTTATTTTCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023959:ENSMUST00000024755:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(56.1=100)
A:
NA
C2:
PF134101=GST_C_2=PD(21.5=41.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types