GgaINT0081154 @ galGal4
Intron Retention
Gene
ENSGALG00000016707 | CLIC5
Description
chloride intracellular channel 5 [Source:HGNC Symbol;Acc:HGNC:13517]
Coordinates
chr3:109252463-109255584:-
Coord C1 exon
chr3:109255403-109255584
Coord A exon
chr3:109252631-109255402
Coord C2 exon
chr3:109252463-109252630
Length
2772 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTTTTTTTTCTTTGGTTTAGATT
3' ss Score
10.65
Exon sequences
Seq C1 exon
CCCTTGAAAGAGGTCTGGTGAAGGCTCTGAAGAAGCTGGATGACTATCTGAGAACCCCTCTGCCGGAGGAGATCGATGCAAACAGCACTGAAGAGGAGAAGGTGTCCAAACGCAAGTTTCTGGATGGAGATGACCTCACCCTTGCTGACTGCAACCTTCTGCCCAAACTCCATGTTGTCAAG
Seq A exon
GTAAAAGATGCCATGTGATGGACAAAGAAGCCTTATTTGATAGGGAAGTGCTCTGATTCAGGCATATAGAGTGTTTGTGCTACATGGTAGGCTAACAAACATGTATTTACCCACTCCCTCTCATGGATAAGCAAATGAGTGTTATATGAAATGCACAGACTGAAGTCCCTTCCATTGCTCCAACAGCCAAGTGTCAAACTAGCAGGATTTTCAGCAGAGGTATCTTAAGTGCTAAGGAAACAGGGTTCGACACACATTCTTTTCAGTATTTCCTATACGTTAATCACACAGAATCACAGAATGGCCTGGGTTGGAAGAGACCTCAAGGATCATGAATCTCCAACCCCCCACCACAGGCAGGGCCACCAACCTCCCCATTTACTAGACCAGGTTGCCCAGGGCCCCATCCAACCTGGCCTTGAACACCTCCAGGGATGGATGGGGCATCCACAGCCTCTCTGGGCAGCTGTTCCAGCACCTCACCATTCTCCTGATAGAGAACTTCCCCCTAACATCCAACCTAAATCTTCCCTCTTTCAACTTAAAACCGTTCCCCTTTGTCCTGCTGTTAACTTTAGTACATGGGAAGATTATCCCGTGAGTAGTCAGTAGCAAAGACAATGTTAAGATTTGGGTGTCCTTTCTCTTTGCTTTTACACTGCTGCTGGTAAAAGTCATTTTTCATATTAATTACTTCCCATTATTCTTAAGAGAGATGTCAAAACTTCAGTCAGTTCCCACCGACTTGTGACCTAAGAGAGACAGTCTGTCTTTGGGGGCAGTATTTGTTCCAGCTGGTGTTTCACAGAGAGAAGTTAACAAATCGATGTCACAGCTGAGGTCCAGGATTTAAGATATACAGTGGTTGCTGGTACAGCACAAATGATGTGCATCGTCTTGACTTCTAAATGTTTCATTTATTTGATTTATCAGATTGCATCTTTCTTTAGAATAAAACAAGTACCTGGCAGACCTTGACAAGCAAGAAAACTAGTAATTAAAACCAAGTCATGCATCTAATTTGGCTCTGTGAGCCAAAACAAACTGAGCCTAGGAGCTGAAGGCACACGTGCAGTAAGATAGATAAAAGTGTATAAGTCACCAGGTAAGTTTGGCTCTTTCTTTGACTCATCTTCATTAGTGACTTTGGATTCACACAATGTAAAATCAAATGGTTCCTGTTTCACTGTGACAAAATGAAAGAAGTCAAACGAGAACTAAAATATTTCTCAGACGAGCATAACCACAGGCTATTATCTGAAAAGCATTTTACAGATGTAAGAAGAGGGTAAAATATTAAGAGTTTTTCACTTGATGAAAGATGTGTGCTGAAAATTGTGAAAATCCTGACTTGAGTTGCCCAGCAGGTTTTATCTTCCCCATGTGTGTGTGAAACATCATTGAAGGCAAGAATGCTTAATTAAATGCAGTTTAAAACAGGATGAGGTGTTACATACACCAAGTGGATCCTGGTAATAAAAACAAATCATAGCCATTTCTGAGAACATGACTGTCCTACAAAAGCTGAGATGGAAAACAGCTCTACCATGTGCTTTTAAAATAAAGGGGAACTCTGTGCCACATATGTATGTAATTTATGCTCAGGAACAATTTTATACTGTCAGAAAAATTAGAGATTGGAAGCACTCATCAAATCAGCTAATCCGTCCCTTCCTATCAGCTAGTTCATTCTGTCACCACAGGATTATTCTATATGGTATATTCTTACAGGGAAACCGAAATATCCCAATCCAGCAAGCTACTTAACCAACCAGCTAGCTTTAAACACAGATTAGTCCCTTTGACTTCAATGGGCCCATACAGGTGCTTAAAATTAAGTATGCACTTAAATGTTTTGCTGAATAAGGGCCTGAACGTTTATAGAAATTGAGAATTTCCCTTGATGGACAATTTCCGAGTCTAACAATTCTTGAAATAGCCATTTTCTCCCCCCAGTTTATGCTAATATTCCTGTTTCTAATGTCTGCTAAATCACCTTGGTTCCTCGATCATGGTACCCATACCATGCCAAATCTTTCCATTGTGAGAACAAGGATACAGCCTTCCAACAGCTGTAGGCAGTTATGTCTTCTGCCTTTGTTGGCCAAGTAAAATATATTACATATGTTAAAAAAAAAAAAGAAAAAAGTAAATATATAATGTAATATGTTGAATACGATAGTCAGTATTAAAATACATTATATATTAACTGTTACTAATGCCCTTCCCCTAAATCTATATATTTTTCATTCAGCTATAAGATCTCTTATTTGGCATCTTACTGTTAAGAAGTGATGTGCATAGGACTGGTGGAAAACACCAGAGAACAATAGTAAAATGAATGAACTTTAGGTATCTTAAAATGCACAATTTGGTGATAGTTGCCAGACAATTGTCTTGAAGTGCCCTTAGGCCAGAAAGTGTGCTTGCAAGATGTGGGATGACCGATGGGCCTTTTCAAGCTTTTTTATTCTAAGTCCACGTGTCCCCAAGAAATTAAAAGAATAATAGAATTATGGAATGGTTTGGGTTGGTTGGAAGGGACGTTTAAAGATCATGGGCAGAGACATCTTTCACTAGATCAGGTTACTCAAAGCCCTGTCCAACACAGTGCTTCAGATGATGGAATCCACAGCTCCTCCGGACAGCCTGTTCTGGTGTCTGACCACACATTTGTCTCCTTTGCTATTAATTACACTACAAGAAAGAGTAAGAAGCTCTCTGAGATGGCACCTGGGGATCTATCACCAACCTTTTTTTTCTTTGGTTTAG
Seq C2 exon
ATTGTTGCAAAGAAATACCGCAACTTCGAGTTCCCAACAGAGATGACGGGGCTGTGGCGGTACCTGAAGAACGCGTACGCCAGGGATGAGTTCACTAACACCTGTGCAGCAGACAAAGAAATTGAGCAAGCCTATGCGGATGTGGCCAAGCGGCTCAGCAAGTCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016707:ENSGALT00000031528:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(45.1=100)
A:
NA
C2:
PF134101=GST_C_2=PD(17.3=41.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]