RnoINT0037294 @ rn6
Intron Retention
Gene
ENSRNOG00000047218 | Clic5
Description
chloride intracellular channel 5 [Source:RGD Symbol;Acc:620659]
Coordinates
chr9:19126151-19134491:-
Coord C1 exon
chr9:19134310-19134491
Coord A exon
chr9:19126828-19134309
Coord C2 exon
chr9:19126151-19126827
Length
7482 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCTTGTTGTCTTTGCTTAGATT
3' ss Score
8.16
Exon sequences
Seq C1 exon
CCCTTGAGAGAGGCCTGACAAAGGCGCTGAGGAAGCTGGATGACTACCTGAACACCCCTCTGCCAGAGGAGATTGACACCAACACCCATGGGGACGAGAAGGGCTCCCAGCGCAAGTTCCTGGATGGGGATGAGCTAACCCTGGCCGACTGCAATCTACTGCCCAAACTCCATGTGGTCAAG
Seq A exon
GTAAGAGAGGCCTGATCATGGGTGCTGGCTTCATCTCTGGTCCAGCCAACAGGGTGGGTGGATCAAGGGGAGTAAGTAAAACCCAGGAGCCAAGAATTTGGGCTCTGAAGTGAGATCTATCAGGGACCCAAGGTCATCCTTCACCTCTTGCTTGGTCAAAGTCTCTCTTGAGATTTAATTTTCTCAATTTTTAATGGAATTATATATCTGGGTGTTTTGTCTATATATAAATATGTAGATATGTATACTTCACACACATATATATGTATATACATAGACATGTATATACATACATACATACATACATACATACATACATACATACATACTATTGTGTGCCCGGTGCCCATGGAAGCAAGAAGGAGGCATCAGTTGCTCTAGAACTGGAATTATAGATGGCTGTGAGCTGCCATATGGGTGCTGGGAGTTGAACCTAGGTCTCTGGAAGAGCAGTCAGTGCTCTTAGCCACTGAGCCTTCTTTCCAGTCCTTGAGCTCTCATTTTTCATCTATACAATAGTCACATGTTGTTTGTCTCTAGGGCTGTTATGGGACTAAGCGTGATATGAATTGCTCATTATACGACTAGAGGGTTTGGATGTAGAGGAAGTAAGATGTCACTGCATGTAAGTTGCATCACAACCTCTTGGAGTTATCCCGCCTTACTTTCATACCTGCATTAGATGGGTCCTCGTGGGTCTTCATACATCCCCATGGACAGACCTTGTAGAAGCTCTGTACAGTACTTACGCATCATTTTTCCTCTCTATTGGCTGGAGCAATAGAGGCTGCAAAGGAGTAAAGCAGAAAGCACCCTCGTGCTCTCAATGAACCTCCTGACCATCTGCAGAGTCTTTCTCTGTACAAGAAAACCACAGTATGAATGTTCATAAGAAGGTATTTTAGGGGTTATTTTAAACAACCCCCAAACTCACCCTGGCCTGCCTCCTGTTGTGTCTGTGACCACCTTTTGCACAGTGTGATGGCACATTTCTGAGTGACGAGGAGCCCTCTATCTTGCTATGTCACAAAGCTCTGATTATTGCAGCATCTTTCTTTATATGGAACTCAAGGATGTTCCCCCAGAGTGATACAGAGCATCTCTGTTCCCCTTTATCTATCAGAAGACAGCAATTGGATCCCTCTGAGTTCTATAAACAGAACCCCCATCTCTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGCTAGACATCAACAGTGGGTATCTTCCTCAATCTGTCTCCACTTTATTCTTCTAAGACCAAGTGTCTCACTGAATCCAGAGCTCACCAATTTGCTTAGACTAGCTGGCCAGCTTCAAGGAACCTCCTGTCTCTGTCTCCCAGCACTGGGATTTGAAGTGCACATCACCACACCTGGTTTGTGTATGGATTACACTAGAGATCTACACTCAGTGATTGCAAAGGAAATGCTTTACTGACTCAGTCCGTCATCTCCTCAGTTCTCCATGACCCCCTTCCTTTTTGACACCCACTGTCTAGAGCAACATGCAGTAGGGTCTTACAACCTGCTTTTAGCATGTCTATGTCTTACCATCTCATTTGGGCAGTGTCTCTGTGAGAACAATCGCCTTTTCCAAGCACACTAACCTTTTAATAGACATTCATTTATGGGCAATCTGACCAGCTACTCTATGTCTTTTAGGATCTTCGTGTTTTTCTACCCTTCACTGAGGAGAAGGCTAGCCCATTGCTCAGCAGTAGGGTAGGTCTTTCAGCTTTAGTACTGAGCTAGACACATAGACTTTCCTCCAATCAGAGCACACACCACTTTGTTGGGGGTAACTTAGATGAACGTCTGTGCATAGGTGTCTGATTGTCTTGGGTTAGAGCTAAAACTGGGGAGAGAATCACGTATTTTCTAGGGCAGACCAATGCAATACTTTACTATGAAGACATTTTTGGCTCAGGGCCAAGCTAAAGATCTCTTGTAGGTCCAGCCAAGTATGTCACTTTGAAGTTATTAATTATTGCAGGCCCCACCCACCAAATTGTGCTTTCTTTGCCTTTCCCTGAGGAATAGGCAGAACCATTAGGGATGTGTGATGCCCGCTCAGTCACACAGTGCCATAGTGACATAACAGAAAGATCAGAAGACTCAAGTTCTAATTCATCATTTGCCACCAACTAGCTGGACAGACTAGAATGAGCCATTTGATCTTTGAGGATTTCATTTTTCTTGTGCCTCAAAGAAGAGGTGTGGATCATTATCTCCCCACACCCCCACACGTTCTTTCCCTTCTTTCTCTCCTTTCTACTCCAACACGTATGGGCAACTCTCTTAAGCATCCTTTATCAAAGTAGGCAGACACCTGGTACTCACATATTCTACCTCATTCTCTGACTGTCTCAGCTCCTTCTAGCCCTAAGTTACCCCTCTGTCCCTGGAGACTGTTCAGCAGGTTTCTAGCTCTGGGATGCAGGGAATCAGAGGACAGCCTAAGAAGGAACAAAGGCTGGGCCTGGACTCATGTCTCCTTGGATTTCTGCTGATCCAGCTTATCAGATCCGGCAACCTGGCAAACCTTTGCAGTGCAGAGAGAGCGTGAAGAGGAGCCAAGGCAGTTTGGCCTCAGATGCCAAAATGTAATTGGGGTTGTGGGAGCTAACTGCTTTCATATGAAATATAAAATTCAGAGCATGAACATGGAAGGTCCTCTGAATGTCAGAGCTCTGTGCACCCTCGATCCTGCCTGCCTTCCTTCATGTCTATTCCCATTCTAGGATGCTGTGGTTCACACTCACTGAGATTCTGGTCTATGGATGGGCTTTTCCTGGCTCCCTACAGTGAGCATTTTCTCTGTGAGGAAACTTGGAAGAGAGAACCACATATAAATGCAGATTTAGATTCTTTAATCCCATGTCTGCTGTATTCAAGCTAATAAAGATAACCCAGAACACATACTCTAGTTTGCTATGCTGTTGCTCTGATAAAAACAATGTCTGAGAGCAACCTGGATCTTTCACATCACAGCCCATCATGGAGGGAACTCAGGGCAGGAACCCAGAGGCAGGAACTGAATCAGAGACCAAAGAGGAACACTTTTTACTGGCTTGCTCCCCTTGGCTTGCTCATTACCTTTATTATACAGTCCATACACACTTGCCTAGGAATGATACTGCCCACAGTGGGCCGGGCTCTCTTACATCAATTAACAATCAAAAGAATGACCCCATAGACATATCCACTAGGCAACCTGACACAGTTCCTTCTCCCAGATGGCTCTACTTAATAAAGTTGACAAAAACTAACCAGTACAGTTCTCACTTAGCACTAAGCTGGAACCCAGCACCACAAAACCTAATAAACAAACAAATGAACAAGAAAAGGAAACCCCACATTAAAATGCTAGCATTAACAAAATATGACTTCATCACTCAATGTAAAATATCAGCCCCACCCCTCGCTTCTTTGCGATCAGGTGACAAAAGGTGTAAATATTGTTCTCAAATCTGAGGTCCTCCTGCCTCTGTCTCTTGAGGATTTGGATCACAAGTTCGGCTATCAGGTTGAGCTTTGCACACTATCTCTTAGTAGGTTTACTGTGCGCCATTTTTATCCCACCTGGCTAATTCCAGCTAGTTCCTTTGGTCGGATCATCATAGATGCCTAGATTTGTTCAGAGCCAAGATAATCCCTTCTCAAAGGTCCCTGGTCAAACCAGAAGGCCCTCCTATTGCAGTGACCAGAGGGAGCATCTTAGGACAACTAGTGGTTTATGTTGACCCAAGCCGGTCATCACACTCAGGCAGGACAGAACATTGTTGGTGGCTTCTTTGGCATTCACTATCAGAAGAGGATAATCTGGTATCAAGAAGTTCTGAATCTTGAATACTGGGATGAACAGGTGTTCCTGGGGGTTCCTAAGTTCTAAGGTAGCAACTTTCCCAAGGATCATTCTTGAATTATGGAGATTTGTTAACATGGAGCCCTGCAGTTGTGGGTTCAGAAGAGACAAAGCCTGGGCGTCTGAGGTGAGATGAATATTTGGCTGTGTTGGGAGTCAATCTTTGCAACTGAGTCTCTGTTGTGTCCTCTTCTTTCTGGGCCGGCACAGTGTAGGGGTAGGTGTGTGAGCAAAAGAACAGACATGGTTTGGTGGCTGCTAAAGAGATAAATTGTAGACTAAATGGAAGGGGTGTGTACTGCAGGGTAACTTTTCAGAACCAGACAGACTTTCCGGTAAGGCACAAGTAGGGTGCTCACAACCCCAACATTACAAAACAAACAGGAAATTGGAGACAGATGTGGAGATGAGCGTAGGTTTTGAGTCATTAACTAGCAATGGAGAGATTCTATGGAGGAGAGAGGGGGTCACAAATTGCTTCCTACACAGGAACATGGGGCCATCCATAAAACCAGAGACTAGAGTAGTTGAGGTTCATCTGCCCTTTCTCAAAGGGAAGAGGCATATTGTAATGTAACAATTTTGAGGGTGCCTCAATGACTATTAGGGGAAGAATGGGTATAAGGACAGAGAACCCCTCTAAGATCGTAACTTTTTGAGTTTGCATAAGCTCGAACACCCAAGCAAACCCTGGGCAGGTGTGCATGGGGCCAGTTTCCCTTTCCAACACAGACGATGGCATTTTAAGGCACTCTAGGAGTTAATTCTCCTCTATCTGAATTGTCACAGAGAATCAGGACAAATTCAGAGGAACTTTGAAACCGAGGCAGTTCCTTGGGTCTCTCCAGATGTCGGAGCACCAGGGTGTCATTCTATGAGTGTGGACAGTAAGAAGTCACAGGTTAATAGTTGGCAGTTGGGGCTCGGGCTCTGAGTTGCAGTGACTTTTCATCATTTGCACAGGGCTGTGTGGGAAGGAGAGTGAGGGGAGAGAAGGAGCTGTAACTAATGTTCCTGATTGCTCAATGGGTAGGCATTTCATGACAGTTCCTATAACCCTCAGTGTCTCCTGACCTTCCTAATGCTATGACCCTTTAATGCAGTTCCTTATGTTGTGGTGACCCTGACCTTAAAATTATTTTCACTGCTACTTAATAACTGAAACTTTGCTGTTATGAATCATAATGCAAACATCTATATTTTCCAGTGGCCTTAGGCAACCTATGTGAAAGAGTTATTCAACTTCTAAAAGGTTAAGAATTACTGAACAGGCCATGAGTATTTCAACCTTTTTTGGTTGGAGTTTGCTCGTTGCTAAAGAGTTTCTACCTCTAAAACAAAAGGATTTGGCAGACAGGGAATGTGACCTAAGGAGATAATTTGCCTAGCATGCATGATGCCTTGGGTTTAATCTTCTGCCACAGAGAGAGAGAAAGAAAGAGAGTGGGGAGGAGTGTTTCATTAGATATAACTAGATGCATCTTTTTCAAGGTTGGGGTAACTGAAGATACCGAAAATAATTCATCTGTTTGCCTTTTCATGAACATCGTTATTGAATGTCTGCCTCACTTTTCTCATCTGTACAATAGGAACATAATTCTTGCAGGATTCTTTAGAGATTTTGGTAGCTTTGCAATCAGTTCTAAGTAGTTTAGCGTAGCACCCAGGCTCATGCCTCAGCGGTGTCAGCTGCCACAGTCTACGTAATGGTTAAGATTAGGGAAGGGTCTAGAAACGCAAAGGCTGTGGTCCCTCCCTGTCCCACTGTTGCTCACAAGCTGCAGAAGGAGAAGGAGAAAAGGATCAACTTGTGCCTCAGGACACAAAGTGTCTGGTTGTTATACAGGAAGTTCAAAACTGAAGTGAGAGACTGGAGGGAAGGTGTATTCTCCCGAGCTTCTCGTGCAGCAGTCTGTCATGGTCTTCTTCTTGGCATAATCTCTGTGGACTCCATGTCACCCATATTGGAAGGGAGGAGAAATCCTTGCATGGCTGAGCTGGGGATCTCTGAGCAGGAGAATATCAGGATCCTGTGGTTTGGGGGTCCCTGCCATCCCAAGAAAAAATAGAGGAAGTTAGAAGCAGAACCCTGGAAGAGATACTGCTCTCTGCTACCCCTGTATGACCCTGAGGGCTACAAGCAAGACTAACGAATGGGCAGGTCCCAGTGAACAGTGAATAAGGGGTCCTTTGTTAAAAAAATTTATGAAGAATTTACTGATATTGACACAGCATTAAAGCAAGAGCAAGGACCTTTTGTGTGCAAGATTCTGGGAGAACTCATAGGTCATGTGTCCAGAAAGTTGTTCTGACTACAGAGACTTCATTCAAAAAAAAAAAACCATCCCACAAGTCTCCATGTAGTAAAGAAGCAAATACATGAGAATGCATACAGGCCAGGTCTGCATGAGCCCTATTAGATGATGGCCATTGAATGTTTACTGTGTGCCAAGCTCTCCTCTCCCCTAAGCATTTTCTCAGGAGCCACCAACCCATTCTGCAGGGCAATGCCTATGATCACGTTCAAGTGATCAGAGACATGTCAGGAACGTGTCCTTGGTCAAAGCCATTAGATGGAGTCAGGATGACAAGTCCAGTTATCTGAGATCCCCGAGCCTGAGCTCTAACCAGTGATGCTGCTGTTTCTATGGACACAAACTTCACTTCTGCAAAGGTCCTGATCTATAGCCCATGAGGGTGACAACTCAGGAAAAGATTAGACAAAACTATTGGCCTCCTCACACACCAGAACTGAAATATGAACACACACGTGTGTGTTGGTGTGGTGTGTGTGTGTGGTGTGTATATATACACTAATACTAACTCACTTTTCTGGTGCCTCCCTACAACACACACACATACACCACACACACACACACACACACACACACACACACACACACACAAGGATGCTTACTTAAAGCAAAGCAGAATAGGGACCAAAAAGAAAAAAGAAAAAAGAGAAAAGAGAAAAGAGAAAAGAAAAAAGAAGAAGGAAATTTGAGCCAAGCAAGGGATCATGTACCTGTAATTATTGTACTTGGGAGATGGAAACAAGGGGATTAGGAATTACAAGGTCACCCTGAGCTACATAGGAAGTTTGAGGTTAGCTTGGGTTCTGTGAACATAGATACTATACGGATAGTATGTTTGTGGTTGTCATAAATATTTCTTGAATTATGTTATACTGTACACCAATCATGTCACAACCGTTTGCCTTATCAATGGGCATTTTCTTCACAGCTTACCCTTTGCATTTTCATGTATTCTGCATATGAGATGTATGCATTTGCAGTGTGCTCATATGCATGTTTGCATACCTGTGATCATATACACACATGTGTACATGCATGGGGAAGCCTGAGGTTGATAAGGAATCCTCCACGATGTCTCTTCCACTTTATTCATTAAGTCAGGCTCTCTCAATCAAACTCAGAGCTTGCTGATATGGCTAGTCTTTCTAGCCAGCTTCTCTCAGCCATGCTGCACGCACATGTACCTGATACACATATCAACCCATGAAATCATGGCCCTAACACCTAATGATTTATTTCCTGCCTTCATACTACCTCTCTCTTGTTGTCTTTGCTTAG
Seq C2 exon
ATTGTGGCTAAGAAGTACAGAAACTATGACATCCCAGCTGAGATGACAGGCTTGTGGCGGTACCTCAAGAATGCCTATGCACGGGACGAGTTCACCAACACCTGTGCAGCTGACAGCGAGATCGAGTTGGCCTACGCAGATGTCGCCAGGCGCCTCAGCCGATCCTGAGCTTGGCCGTCTGACCCGATTTCTGCTGCAGAAGAATTTCATTTCTCCCAAAGGCTTTCAGCTCTACAGACTCTTCTTCACCATTGCCTTGGGGAGGCATCAAAAAAGTTAGGCCACATCCTACTGGCACCCCTGAACTCAGCTCCAGCCTTCTACCTTCTAAGATCAGTGCCATCCTTCTGCCTTGACCTGCAGAAGCCCAGTAAGCAGCGAGGACGCAGTAGCAGATGTTTCCACCTGCTGGTCTGACCTAGGGTCAGTGTGTCAGGGGTCAGTTTGCGGAGCTCCCATGGGATTGTCACTGTTCCTTTCTGCCAATGTCATAATGCTTTCTCAGATGCTCTAACAACTCGAAATGCCAGCTTCCCCCTTCCCCTCCTTCCTCAGCAACTGCAAGGTGATGGACAAATGCCATGACATGATCGTTAGGGAGAGATCTATGCTTTGATTGGGGAGAGAGTGGTTGGGGGTAGTCAGATAGGTATGACTCTGGATATGTAGCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047218:ENSRNOT00000073667:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(45.8=100)
A:
NA
C2:
PF134101=GST_C_2=PD(17.6=41.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]