BtaINT0039293 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010244 | CLIC5
Description
chloride intracellular channel 5 [Source:HGNC Symbol;Acc:HGNC:13517]
Coordinates
chr23:19167358-19173811:-
Coord C1 exon
chr23:19173627-19173811
Coord A exon
chr23:19167617-19173626
Coord C2 exon
chr23:19167358-19167616
Length
6010 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TAACGCCATCTCTATTGCAGATT
3' ss Score
9.64
Exon sequences
Seq C1 exon
CCCTTGAGCGAGGCCTGACCAAGGCTCTGAAGAAGCTGGATGACTACCTGAACACCCCTCTGCCGGAGGAGATCGATGCCGACACTCGCGGGGATGATGAAAAGGGCTCCCGGCGCAAGTTCCTGGATGGGGACGAGTTGACCCTGGCCGACTGCAACCTGTTGCCCAAGCTCCATGTGGTCAAG
Seq A exon
GTAAGAGCGCTCTACCTGTGGGTGCCCCCCAGATCCACTTCATCGAAGGCCCGGGTCTCTTGCGAGGATGAGACAAGGACAGGGCCGCCTGCTGATGGAGAATCGGAGTTTGAAAATCTCGTGAACAGGGACCCAAAGTCAACCTCTGCTGCATGCTGGCTGTGTAGCCCCTCTGAGCTCCAGTTACACAGGCATGTGTTGCTTAACCAGGGCTGTTGGGAGACTAAATGTGGCCTGAAAATGCCTGCCATGTTGTAAGGGCTTCTCTGGTGGCTCAGTGGTAGAGAATCTGCTGCCAATGCAGGAGACGTGGGTTCGATCCTGGGGCCAGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCGTGGGAAACCCCATGGACAGAAGACTCTGGTGGGCAACAGTCCTTGGAGTCACAAAAGAGTGGGATATGAGTTAGCGATGAAACAACAGCAAGCCTATTATATGTAGTTACGTATAGTCTTGTCACTCCAAAGACCTCTTCCTTACCTTTTCATCATAGGTTTTCACTGGCTACCCACTACCTCATGATCTCTATTAAGCGTGATCTCATATACGTGTTTTCTTTGTGGGCAGACCCACCTTTTGATTTCCTATAGCCACTCCTTGGGGCAGGCAGACAGCATCTTCCTCTTCTACTAGTTAAAAAGCTGGAGGTTGCAAAGAAATGATAATTATTTTTGCTACCATTGCTTCCCAATCATGGTCGATACAGAGAATAATCTTTCCTATCCAGCCTTAGGATCCGAGAAATGGAAAGAAGAGGGGAATTCTGAGTCATCCCAATCTCCCATCCCAAAGTGGACCCCTTCCTGTGTGTCTGTGACAGGCTTCAGTGAAGCTGTGACTGCATGTTTCTCATGACACAGAGCCCTCTGCCTACCAAGCCAGCCCTACCATTTTGGATGGCTCTAGTTATTAAGAGCCATCTTTCCTTACATGGAACCCAAACCTGCCTCCCTGCTTGCTTGGTTCTCTGGAACAACACAGAACAGGGCTGCTCTCTTCATCTCATTTGAAGACAGCAGTTTTGTCCCCTGAATTTCTCTGAACTGGGGTTCCGTGGTGGCAATGCAGGAGACCTGCGTTCAATCCCTGGGTTGGGAAGATCCTCTGGAGAAGGAGATGGCCACCCACTCCAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTCACAAAGAGTCAGACACGACTGAGCAACTAAATAACAGCAACTATAACATATACATGTATATATGTTGTTTTTCAGATTCTTTTCCATTATAGGTTAGTATAAGATATTATAGTTCCCTGTGCTATACAGTAGGGCCTTGTTGTTTAGATATGTTTTTAATATATATAGTCGTGTGTATATGTTAATTCCAAACTCCTAATTTATCTCCCCTACCCCCACTATCCCTTTTGATAACCATAAGTTTGTTTTCTAGCATATCCTTTTCTGACCCTCATCAGTCCAGAGAAAAAGACAGTGGGATCATAGAGCTAGACTGCTCTCTTTTTCTACATCTGTTGATCTCTTACAGTCTCAGTCAGACAAAAGCTCTGTGAGGATAGGTCTTGTCCAAGCCTAATGGTGGGTACATGGTAGCCCTTTAATTAACACTCATTGGTTGATCATTTGATCACCTAGCTTGTGACACTCAGTTTCTTTCCACCTGTCACTAAGGAGAATCAGATGCAGTCATTTATCAGTTGGATATCTGCCTGTTGGTTTTCGGCTGATGTCCTGAGCTGGAAATCAGAACCCTTCATTCAGAGCACACATCAGCTGGAGTTGAAACATAAGCTGAGCTTGCCCTGGTGCTCCCAAGGGATGCATCAGGGCTGGATCCTGGGAGGGAATCATGCTTGCCAGGGCTGATGGGCAGAGAAAATGCAATCCATTCATATGAAGACACTTTGGGGTTCAGGGCCAAGCCAATGGTGATTGGTAAGTCTGTCCAAGCTGTTTGTCTTTGAAGTTATTAATAACTGCACGGTCAACCCACCTTCAAAACATCCTTTATTCTCTTTCCTTGAGGACGAAGTGGCACCATTATGGGTGATATGATTCTATCGGTAACACTATCAGAGGTCATGGGAAGAACACCATTCTAGAAGTCCAGAAACTCAAGTTCTGTTGTCGTTGAGTCGCTCAGTCATGTTTGACTCTTTGCAACCCCATGGACTGCAGCATGCCGAACTTCCCTGTCCTTTACTATCTCCTGGTGTTTCCTCAAAGTCGTGTCCATTGAGTCGGTGGTGTCATCCAACCATCCCATCCTCTGTTGTTCCCTTCTCCTCCTGCCCTCGATCTTTCCCAGCACCAGGGTCTTTTCCAATGGGTCGGGTGTTCGCATTAGGTGACCAAATTATTGGTGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGATTGATTTCCTTTAAGAATGACTGGCTTGATCTCCTTGCTGTCCAAGAGACACCACCAACCAGCAGCAGGAGCTGGGACAAGTCCTTTACTCTTTGGGGAAGTCATTTTTCTCATGTCTGAAAGAAGAGGTGTGGATGATTATTTTCCTTCTCGCCTCTTCCCCTCTCTTCCTCCCCGTCTCTCAGTCACACATGGTTGGACCACCCACTCAAGAATCACGTGTCCAATTAGGTGGACAAATGGGCCTCCCAGGCCCCATGCTTCATCCTCCGGTTCCTCCAGTTCCTTCCAGCACTAGACTCCCAGTTACGCCCATCCTTGGATGATGTTCAGTGCATCATTCACTTGGAGGAGCTGGAGTTCGGAAGGAGGATGACCCACAAAAGGACAAAGGCTGGGCCTCGCTTCCCATCTCCTTGGATTTCTGCTGATCCAGCTTATCAGAGCCCAGAGCCCTGGCAAACCTCTAAAGTGCAGAAAGCATGAAAGGAGAGCCAAGTCAGACCTCCAGTTTGGCTTCAGATGCCAAGACTTAATCTGGGCTGGGGGAGCTAACTGTTTTCATATGAAAGCAAATTCAGAACATGAGCATGGAGGTTCCTGCTGACGTCAGAGCTTCTCCCGCGTGCGTTCCCTCCCTCTCTCTCATTGGCTTTCCTTCAGCTTTATCTGCGTCCTTGGAGGCCGCGTTGCTCCAGCCCCACTGCTCGCTGACAGCCTGGTTTGAACTTTCATTGTCTGGCTGCCTCCTATTCTCATCTCCCAACTCGAGCCAATATGTGAGGAAAGAACCAGCTCTGGTCAAGCTCAGAGTGTATGGATCCGGGCAGGGAGGGGCATGTGGGACTCTTGTCGTCTCCCGAAAGACCCTTGTTCTCCACCACCCCCCAGACCCTCACGTGGCACAGGGACCTGTTTAGCCCCTGCAGCAAACAGGAAGGGAGCTATACATACAAACACAAATATAAATTCATATGTTGAGTCTCTGTTGTTTCCCAGTTCAAATTATATCCTTTAAAAACCTGAAAATAAATTCCAGCAGCGAAAGACTCAAGGCCACCCCATGGATTAGTTTTTTTTAATGGATGTCTTGACCTTATTATGGCTCTTTTTCTTTCCTTTTCTCCATTTAAAAAATTGGAGTATAGTTCATGTACAATATAAGTTACAGGGGTACAACAGTAATTCACAGTTTTTAAAGGCTATACTCCATGTATGGTGGTATGGAAGTCACTCGGTCATGTCCAACTCTTTGTGACCCCATGGACTATAGCCCACCAGGCTCCTCTCTCTGTCCATGGAATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTCCCTTCTCCAAGGTATCTTCCCTACCCAGGGATCAAACCTGCATTGCAGGCAGATTCTTTACCATCTGAACCACCAGGGAAGCCTATACTCCACGTGTAGCTACTATAAAATACTGACTATATTCTCTGTATTATACAATACACACTTAGAGCTTATGTTATACATAGTAGCTGGTGCCTCCTAATCCCCTACCTCTGTTTTGCCCTTCCCTTCTGGTAACCACTAGTCTGTTCTCTGTATCTAGTTTTCTCTTTTAGATTCCACATATAAATTGTAACATACATTATTTGTCTCTCTCTGTCTGACTTATTTCATTTAGCAAAATGCTCTCTAAGTCCATCCATGTTGTCGCAAATGGCAGAATTTCATTCTTTTTCATGCCTGAGTAGTATTCCATGGTGTATATGTATCACATCTTCTTTATCCATTCATCTGTTGATAGACATTTAGGTTGCTCCCATGTCTTGACTACTGTAAATAGTACTTCTATGAACATTGGGGTGCATGTATCTTTTCAAATTAGTATTCTTCTTTTTTTTTTTAAAGATATGTACTCAGAAGTGGAATTACCAAATCATATGGGGGTTCTGTTTTTAGTTTTTTGAGAAACTTTCATATGTTTTCCACAGTGGCTGCACCGATTTATATTCTGTGGGCTTTTTTCATTCTCTCTGGCAGTTTCAAGCTGCTTCCCTCATTGGAGCCTCCACCCCTGCATAGATTTGCTCCTGACCCAAGACAGCCTCTTCTTAAGGCTGTGGGCAGCCCCAGGGCCCCTTCCTCTTGCAGTGAAGACAGGGCTTTGTCCAAGGACCCTGAACCCATCTCTTGTGCTCATTGGCCACACCTATCCTGGATGGACAGACACTGCCAGGTGGCTTCGGTACTGACCTCCCCAAACCAGTTATATTAACCGAAAGAATTTAATATGAAGAAGTGCTAAGTACCTAAGAACTAGGGAGGCGATATGTACCTTGTGGTTCCTTCTTCAGGGCAGGGGGCAAAGGGAAGAGTTTGGAATGATCAAAACTTGAACTATACAATAGCCAAGACATGGAAACAAACCGAATGTCCATTGACAGATGACGGATAAAGAAGATGTGGTGGGTCTCAATGAATTCTGACATTAGATGATGTTTCTTGAGCACTTAAAGCCAGCACCTCCCCCAGATGACTTTTATGTATATTAAATAACTTACTACTCCAAGGTAGGTCATCTTATTATTTCCATTTTAGAGAAAAAGAATTTGGGGCTCAGAGAAGTTAAGTAGCTCGTCCAAGATCACACCATTGTCAAGTAATGGGGTCAGGATTACAGATCTAGTCATCTGGGATCCAGAGCCCACGCTTTTAACCACTATGCTATTGTCTTTCAATACAAACACCACTTCCCCAGAAGGCTCAGGTCCACAGCCCCAAGTGTGGCAGTCGAGGGAGAGAACAGGAATCACCGTCTGTTCACCTCCACATACCCTGAAGCTCCATATGCATTCCGGCATCTAACTTGCATGTTTTTTTGCTTTGCATTCCCTTCTGTAGATAAGGCTGGATGAGGGAAGAAAATAGTTGTCTATAATTCTATCAGTCAGACGTATCTTCTGCTAACAGATTGGTGTATATACTTCTGCTCATCATACATATTCCTCCTAATGCTTTATACTGTACTTCCAACTGAACAGCCTCTTGAAGCGTTCTTCAAGTCCCTGGAATTTTCTCTGCAACCTCATTTTTCATGGCTCTCCAGTATGCCACTGCATGTATATATGACAACGTATTTATCCATTCATGTGTTGTTGGACATTTGTGTTGGGTACCTTTTTTTTTTTTTTTCTATTTCCAAATAGTCCTGCAGTCCTATTTACAAGAAACTATATCTTCTTATACACTCACGATATTTCCTAAGGAAAGGAATACCTAGAAGCAGAATTACTAGATCAGAGGACAAATTATACTTGCTTGGGAAACTATAATACAACAAAAATTAAAAAAATAGCATATGATAATTAAATCAAATAGTGTTGCATTAAAAAGGCGGCACCATCACCTTGCATGACAAGTGTCTTGCTGCTGGCCCCTGGGGGACACATGGAGGGTCTTCCCGCTGTGCACACACAGGGCCACATCACTGATCCTTCCCGGTGATCTATTTCACGCTGCCACATCACCAACACTTCCTGGTGATCTATTTCACGCTTTAACGCCATCTCTATTGCAG
Seq C2 exon
ATTGTGGCCAAGAAATACCGCAACTACGATTTCCCGGCTGAGATGACGGGTCTGTGGCGGTACCTCAAGAACGCCTACGCCCGGGACGAGTTCACCAACACCTGCGCGGCCGACAGCGAGATCGAGCTGGCCTATGCGGACGTGGCCAAGCGCCTCAGCCGATCCTGAACTTGGCCGTCTCGCCCCATCGCTGCTGCAGAAGGACTCCACCGTCTCCCCAAGGACTCTGGCTTCACACACTTCTCTTCCACGCCACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010244:ENSBTAT00000013537:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(58.7=100)
A:
NA
C2:
PF134101=GST_C_2=PD(22.1=41.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]