HsaINT0036332 @ hg19
Intron Retention
Gene
ENSG00000112782 | CLIC5
Description
chloride intracellular channel 5 [Source:HGNC Symbol;Acc:13517]
Coordinates
chr6:45866190-45882146:-
Coord C1 exon
chr6:45881965-45882146
Coord A exon
chr6:45870993-45881964
Coord C2 exon
chr6:45866190-45870992
Length
10972 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCCTGCCATCTCTGTTTTAGATT
3' ss Score
11.5
Exon sequences
Seq C1 exon
CTCTTGAAAGAGGCCTAACCAAGGCTCTAAAGAAATTGGATGACTACCTGAACACCCCTCTACCAGAGGAGATTGACGCCAACACTTGTGGGGAAGACAAGGGGTCCCGGCGCAAGTTCCTGGATGGGGATGAGCTGACCCTGGCTGACTGCAATCTGTTGCCCAAGCTCCATGTGGTCAAG
Seq A exon
GTAAGAGAGCTCTACCCACAGGGGCCTGCAAGATCCAGCTCCATCTTAGGCCCAGGTCACCTGTGTGGATGAGTCAAGGACAGTACCACCTGTTGGTCAAGAACCTGGACCCTGAAGTCAGGTAATAAGGACCCAAGGTCACCCTCTGCTGCTTGTTGGCTGTGTGGCCTCCTTGAGCTTCAGTTTTCATTTATAAAATAGGCATATATTGCTTACTTCAAGTGTTGGTGGAAGAGTAAATACAGCGTGAAAGTGCTTGGCATATTGTGGGGGCTTAATATGTGTAATAGTCGCAATTATCGTTGTTGTATACAGTCATATCACTCCAAAGGCCTCTTCCTCATAGGATTTCCCTGGCTACACCCCTACAGCTCTATTAAATGTGCCCTCATATGCATTTTTTCTTTGTGCACAGACCCACCTTCTCACTTCCTCCAGCAACTTCCTAAGGTGAGCCCACATTATTTTCCTCATCTATCAAATGAAGAGGTGGAGGTTGCAAGAAGTGATGTCACTTTCTTGCTATCATTGCACTTACTAACCATTTGCAGCATGTAGTGTCATCCTCTCCTATATAACAAACCCTGGGAATCTGAGAGTTGGAAAGGACATTTAGAGGTCATCCAAAACAATCTCCCACTTCAACCTGGACCACTTTCTGCTGTTTCTGTGACAGGCTTCTGTGAAGCTGTGACTGCAGCCTCTGAGAACGAGGAGCCCTCTGCTTAATGAGCCAGCCCTACCATGTTAGATAGCTCTGATTATTAAATCATTGTTCTTTACAATGAGCCCAAGCATGCCTCCCTGCTATCCATTTTTTCTCTAGAGTAACAGAGAACAGCTTTGCTTGCCTTCACCTCATTTGAAGACAGTAGTTGTATCCCCCTAAGCTCTGTCAATGAGCACTTCTTCCCCCATTCTTTCCTGACCCTCGTCAGCCTAGTATCAGATAGCCATACTGTGCTCTATTTTACGCATGCTTATATCTTACTGTCTCAGCCAGACAGCAAACTCTGTGAGGAAAGGAACTTTTTAAAGTGTGATGGTGGGCACACAGTGGCCATTCAATAAATACTCATTGATTGATCATTTGATCACCTGGTGTAAGTCTTTACGATATCCAGTTTATTTCTATGCTTCACTGAGAAGACTCAGATTCAATCATCTGTCAGCTGAGTATATGCCTATTATTTTTCAGCTCAAGTCCCGAGTCAAAAATGCTATCTCCTCTCCAACCAGAGCATGTACCAGCTTGAGCTGAAGTCACTCAGTTGTGTGTACACTGGTGTTTCCGTATGCCTTAGAGCTGAAGACTGAGAGGGAATCATGCATAAAAATGGAGTGGGCAAATACAACCTATTTAGAAAAGAACATTTTGGATTTGGGGCCAAGCCAATAGTCACTTGTAGGTCCAGCCAATCTATGTCTCTTTGAAGTTATTAACTACTGCATGCCCCACCCATCATCCTTTATTCTTCTTCTCCTTAGGAACAAGTACCACTGAAAGGGATGATATAATTCCAGCTCAGTCACACTGTGTCAGAGTGATACAATGCAAAGATCAGGAGACCCGAGTTCCGGTCCTGTATTTGCTGCCAACTAGCAGCATGAGCTGAGGCACATCATTTAATCTTTTTGGAATTCATTTTTCTCATGCCTAGAAGAACAGAAGTGGATTGTATTCCTTCTTGCCTTCTTTTCCTTTCTTCTTTCCCTCCTTCTTTCCTTTTCTCTTGCTCAAACATGTATTCACTACCACTCAAAAACCATTTGTTGAACAAAGCAAACAAATGAATCTCCCAAGCCTTGGGCTTCATCCTGTGATTTCCTCAATTCCCACCTGCCTTAAATTACTCAGTGAAGCCCTGTCCTTGGAGAAAATTCAGTGGGTGGTTAACCCAGAGAAGCTGGAGATCAAAAAGAAGATGGCCAATGAAAGAACAAAGGCCAGCCCTTGGCCCCTATCTCTTTGGATTTCTGCTGATCCAGCTTATCAGATCCCAGAAACCTGGCAAACCTCTAAAGTTCACAAAGAGCGAAGGGGAAGCCAAGTCAGGCCTCCAGTTTGGCTTCGGATGCCAAAACTTAATCTGGGCTGTGGGAGCTAACTGTTTTCATATGAAAGAGCAAATTCAGAACATGAGCATGGAAGTCCCTGCGAACGTCAGATCTCCGTGTGCATCCTTACCCCCTTGCTGCTTTCATGCTCACTCTCCTCTTGCGTGGCTCGCTTTCAGGTTTATCTCCATCCCTGGAAGCAGAGTTGCTCTGGCCCAGGCTCTCCATGAGAGTTTGGCTTGAACATTCATTGTCTGGCCCCCTCCTAGTTCTCATCTCCCAAAGTCAAGCCAATGTGTGAAGAAATGACCAGCTCAGCAGCCAAGGCCCAGGGTGCACAGGTCTTCGTTGGGAGAGGCATCTGCAGGCCTTTCCTTGCTCACTGGGATCCTTGCCTAGCATAGTGACGATGTTCAGCCCTGGAGACAAACAAGAAGGGGAACACCAACATCAATAGAAGTATATATTTACAAATTGCATTTCTGCTGTATTGAAACTAACATTCTGCCCTTTAAAATCCTGAAAATAAAATTTCAGTATGAAATGACTTGAGGCTACTCTATGAATCAGTGTGTCACTGTGAAAAATACTTTTGGATCCCTTTATCTTATTGGAGACCCTTTTCATCCACTCTGATAAATTCCAGCCAGTTCTCTTGGTCAGGCCACCACTCCTGCATGAATTTGCTCTTAGCCAAGACAGCCTCTTCTCAAAGGAACTTGGCCCAACCCAAGGGATCATCATCTTTCAGTGAACAGAAAGGGACTGGGGAGATATCGTGGTGGCATCTCTCATTGTGAGAGCTTTATCAAAGGACTCGGACTTCATCACCCTTGCTTGTAGTTACCTAAGCCAGACAGAACAGTGTGGGGGTGGCTTCTTTGGTGCCCACACCAAACCAGTTATTTTAACAGAGAGAATTTAAGGAAGTACTATGTAGTAAAGAACTGGAAAGGCAAAATATACTAGGAGGTTCTACCTTCAAGAGGCAGCTACTACTCCTAGGGCAGGAGGAACAAAGGGAAGAGGTTGGAATTATTAAAACTTACAAACTTAGGGGCTCTGTAGATGAGGGACCCTGCAGAGCTGAATGTCGGTGAAAGTGATGCTCAGCTGGTGCCAGGGTCCAAGCTCAGGTTGGCTGGGATCCAGCCTCTAAAGCAGAGTTCCTGCTATGTGCTGGCCTCTCTGCGTGGGTATGATGAAGTGGTCCTGTGAGTATTGACAAAATAGCAAACTGGATTCAGCTGCTGCTCCCAGAAATAAATGGAGACTCTGACAGAAAGAGGAAGCTGAAAAGCATGGGCTTCTCCCTCCCTTCTCCTCCTCCAACCTTGCTGGCTCTCTCCAGTAACTCCTCTTGGCAGAACCTAACAGGATTCACTGGCAAAGAAGAGATGTGATCTGCTCAGTCCTAGCCCCAGCATCACAAAAAATAGTAAATAGAAGAGTAGGTTTGGAGACAAGCAACAGTAAATTAATGGCTGGAACATGAGGGATTCTGAGTAGACCGACCCATTGCTTTATCAGCTATGTAGGGCTGAGTAGTAAAGTAGAAAGAACTGTGGATTATAAAGCAAGGACTGTAATAAATATTAATGGTAACTCAATAGATATTGGTTAAATTAATTAATTTATCATGTAACATTAAGTCACATAATCTCTTGTAGCTTCAGTTTGCTCATTGCTAGGGATCTTCAGTCTTTAAAATTATTTTATTACACTTGACACTAGAGAACCTTGTCTGATGTACAGATAAGATTGTAAACTTTGAATCCCAACCTATTTAATCTCCCTTTGTCTTGCTTTTCTCATCTGTAAATGGGAATATAATAGATTCTTCCTTATAGGATTATTTAGAGATTTAAGTACCTTGCAAAGTACTTAAAGCAGTCCCTGGAACAGAGCACACAGTGAATAAATGTTTGTTATTATCATTCCTCTGATCAACATCATTATTGAGATTATCAAGGAGTACAGAAGTGAAGAACCTGTGATTGCTATCCTTACACTGCCCACAAGTTAGAAAAAAAAAGGGTACTGAAACAGTAATCATGATTCAGAATAGATTATAGCTCAGTGTTATAACAGAAGTTCAACACTGGCCTAGGAGCATAGAGGGGAAAAAATGTTCCCAGATGTCTGTGAACATGTCTGCAACAGTGAGTTTTTCATCCATCAAGTCATCATCATCCTTCACTTCAGCATAACTTTCTGGGAAACTCTGCATATTACCAGCACCAAAATGGAGACAAAAGCCCAGAGTGACTGATCTGGGGCTTCTCTGAATGGGAGGATCCCAGGGTCAATGGTCTAGGGCCCTCTCTGAAAATGAAAGCAAGGTAGAAGGTGGATATACAGATACAAGAAATCCAGAGAACACCTGTGAGATACCATACAAAATGAACTTCACCAAGGTATATAGTCACCAAACTGTCCAAGGTCAATGCCAAAGAAAAAAGTCTTAAAGGCAGCTAGAGAAAAAGGTCAGAACACATACAAATGGAACCCCATCAGGCTAACAGCAGACTTCTCAGCAGAAATATTGCAAGCCAGAAGAGATTGAGGGCCTATTTTCAGCATTCTTAAAGAAAGAAATTCCAACCAAGAGCTTCATATCCCACCAAACTAAGCTTTGTAAACAAAGGAGAAATAAAATCTTTTCCAGACAAGCAAGTGCTAAGGGAATTTATTACCATTAGACCATACTTACAAGAGATCCTTAAGGGACTCTAAACATGGAAACAAAAGAATGATACCTGCTACCACAAAAACACACTTGTAAATAGCCAACAGACCCTATAAAGCAAGCACACAATAGAAACTACAAAGTAACCAGCTAACAGCTTCACGAAAAGATCAAAACCTCACATATCAATATTAACCTTGAATGTAAATGATCTAAGTGCCCCACTTGAAAGACATAGAGTGGCAATTTGGATAAAAAATAAGAGCCACTCATCTGCTGTCTTCAAGAGACCCCTCTCATATGTAACAACACCCATAGGCTCAAAGTAAAGGGCTGAAGAAAGATCTATTACACAAATGGAACATAAAAAAGAGCAGGGGTCACTATTCTCATATCAGGTAAAACATACCACAAACCAACAATAGTGAAAAAAAAAAAAAGAACAAAGAAGGGCATTACATAATAGTAAAGGGGTGACTACAACAAGAAGACTTAACCATTCTAAATATATACACACCCAACACTGGAGCACCCAGGTTCACAAAACAAGTACTTCTAGACCTATGAAAAGACTTAGCAACAACACACAATAATAATGGGGGACTTCAACAACTCACTAACAACGTTAGACAGATCTTCGAGGCAGAAAACTAACAAAGATATTCTGGACTCAAATTCAACACTTGACAATTGGACATAACAGACATCTACTGAATACTCCACCCATTGACCATAGAATATACATTCCTTTCATCTGCACACAGAACATACTCCAAGATCAACCACATGCTCAGTCATAAAGCAAATCTCAATAAATTAAAAAAAATAGAAATTATATCAATCATACTCTTGGACCACAGTGGAACAAAAATAGAAATCAACACCAAGAAGATGTCTCAAAATCACACAATTACATGAAATTAAACAACTCACTCCTGAATTACTTTTGGGTAAACAACAAAATTACGGCAAAAGTAAAAACATTCTTTGAAATAAATGAAAACAAAGACACAACATACCAAAATCTCTAGGATGTAGCAAAAGCAATATTACAAGGAAAGTTTATAGCACGAAATGCCTACCTCAAAAAGTTAGAAAGATCTCAAATTGACAAAGTAACATCACACCTAGAGGAACTAGAAAAACAGGAACAAACTAACCTCAAAGCTAGTATAGTAAAAGAAATAACTAAAATCAGAGCAGAACTGAATGAAATTGAGACCCAAAAATTCATACAAAGAATCAATGAAACCAAAAGTTGGTTTTTTGAAAGGATAAAGAAGATCCATAAACCATTAGCTAGATTAACAACAACAACAACAAAAAAGAAAATCCAAATAAGCACAATCAGAAATGACAAAGAAGACATTACAATTGAGCTCACAGAAATACAGAAGATCCTTAAAGACTATTATGAACATCCCTATGCACACAAACTAGAAAATCTAGAGGAAATGGATAAATTCCTAGAAATACACTTTTCAATTGCCTTGAAAACTGTAACAAGACAAGGATGCCCACTCACCGCTCCTATTCAACATCATAGTGGAAGTCCAGAGCAATTGGGCAAGAGAAAGAAATAAAAGGCCTACAAGTAGGAAAAGAAGAAGTTAAATTCTCTCTTTACTGATTATGATTCTATTTCTTGAAAACCCTACAGACTTCACCAAAAGGCTCCTGGAACTGATCAACAACTTCAGTAAAGGTTCAGTATACAAAGTCAATATTCCAAGATTGAATTGGGAAGAAATTGAAACCCTGAACATACTAATTGAGTTATGAAATTGAATCAGTAATTTAAAAAAACCTACCAACCAGTAAAAGCCCCAGACTAGGTGGATTCACAGCTGAATTTTACCTGACATAAAAAGAAGAACCAGTACCAATCGTACTTAAACTATTCCAAAATATCAAGGAAGGACTCCTTCCTAACTCATTCTATGAAGCTAGCACCACCCTGATACCAAAACCTGACAAAGACACAATGAAAAAAGAAAACTTCAAGCCAATATCCCTGATGAACATAGACACAAAAAATTCACAACAAAATACTAGCAAACCAAATCCAGCAGCACATCAAATAGTTAATTCACATTGATCAAATAGGCTTCTTCTTAGGATGCATGGTTGGTTCAACATACACAAATCAATAAATGTTATTCGCCACATAAACAGAATTAAAAACAAAAATGAAATGATCATCTCAATAGACACAGAAAACCTTTGGATAAAATTCAACATCCCTTCATGACAAAAACCTTCAATAAATTAGGCATTAAAGGAACACCCCTCAAAATAATAAGAGCCATCTATCTATGACAAATCTGCAGCCAACATCTTACTGAATGGGCAAAAACTGGGATAATTCCCCTTGAAAACTGCAACAAGACAAGGATGCCCACTCTCACCACTCCTATTCAATGTAGTAGTGGAAGTCCTTGCCAGAGCAATCAGGCAAGATAAAGAAATAAAAGGCATACAAATAGGAAAAGAAGAAGTCACATTCTCTCTCTTTACTGGTGATGTGATTCTATTCCTCAAAAACCCTAAAGACTTCACCAGAAGGCTTCTGGAACTGATAAACAACTTCAGTAAAGTCTCAGTATAAAAAGTCAATGTGGCCGGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCGACTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACTCTGTCTCTACTAAAAACACAAAATTAGCTGGGCATGGTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGTTGAGGCAGGAGAATCGCTTGAATCCAGGAAGCAGAGGTTGCAGTGAGCAGAGATTGCACCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAAAAAAAAAAGTCAATGTACAAAAATCAGTAGCATTTCTGTATGCTAACAATATTAAAGTTGAGAGCCAAATCAAGAACATACTCCAATTTATAATAGCTGCAAAAATAAAATAAAATAAAATATCTAGGACTACATCTAACCAGGGAGTTAAAATCTCTACAAGGGGAGCTATAAAACACTACTTAAGGAAATTGCAGCTGACACAAACAAATGGAAAAACATTCCATGCTCATAAATTGGAAGAAATAATATTGATAAAATGGCCATACTGTCCAAAGCAATATGCAGATTCAATGCCATTCCTATCAATCTACCAATGTCATTTTTCACATAACTAGAAAAAACTATTCTAAAAATTCGTGTGGAACCAAAAATGAGCCGGAATAGCCAAAGCCACCCTACGCAAAAAGAACAAAGCTGGAGGTGTCACATTACCTGACTTCAAACTGCACTATAAGGCTACAGTAACCAAAACAACATGGTACTTGTACAAAAACAGACACATAGATGAATGGAACAGAAAAGAGAACCCAGAAATAAAGCCACACACCTACGGTCATCTGATCTTCCACAAAATTGACAAAAATAAGCAATGGGGAAATGACTTCCTATTCAATAAATGGTTTTGGAATAGCTGACTATCCCTATGCAGAAGAATGAAATTGGACCCCTACCTTTCATCATATACAAAAAGTAACTCAATATGGATTAAAGATTTACCTCAACTTGTAAGAATCTTAGAAGAAAACCAGGAAACATTCTGTACATCAGTTTTGGGAAGTAATTTATGATGAAGTTACAAAAGCAATTGCAACAAAAATAAAAATTGACAAGTGGGACTTAATTATACTAAAGAGCTTCTGCACATAGAAACTATCAACAGAGTGAACAGTTAGCCCACAGAATGGGAGGAAGTATTTGCAAACTATGCATCTGACAAAGGTCTAATATCCAGAATCTATAAGGAACTTAAACAATTGAATAAGAAAAAAACAAATAATACCATTAAAAAGTGGGCAAAAGACATGAACAGACACTTCTCAAAAAAAGACATAATAAGTGGCCAACAAACATTAAAAAAAAAAAAAAAAAGCTCAGTATCACCAGTCACCAGAGAAACGCAAATTAAAAGCACAAGGAGACACCTCCCTCACACCAGTCAGGATGGCTATTGTGAAAAAGTCAAAAAGCAACAGATGTTGGTTAGTCTGTGGAGAAAAGGGAACACTTATACAGTGTTAATGGGAATGTAAATTAGTTCAGTCACTCTGGAGATTTCTCAAAGAACTAAAAGCAGAACTATCATTTGACCAAGCAATCCCATTACTGGTTATATATCCAAAGGAAAATAAACTGTTTTACCAAAAAAATTTCATATGCATTCATATATTTATGACAGCTCTCTTCACAATAGCAAAGACATGAAATCAACCTGGGTGCCCATCAACAGTGTACTGAATAAACAAAACATGGTACATATACATCATGGAATACTACATAGCCATGTAAAGAAACAAAGTCATGTCCTTTTTAGCAACATGGATGCAGCTGGAGGCCATTATCCTAAGCAAACTAATGCAAGAACAGAAAACATGAAACTACATGTTCTCACTTATAAGTAGGAGCTAAGCAATAGGTACTCACGGACATAAAGATGGCAACAATAGACACTGGGGACTACTTGGCAGAGGGATGGAGGGGGCAAGTGTAGAAAAACTATGCTCATTATTTAGGTGACAGGACCAATCATACCCCAAACCTCAGCATCATGCGTTATACCCAGGTAACAAGCCTGCACATGTACCCCCTTGTATCCCCCCAAAAAAAAGAGGGAAGGAAGGAAGAGAAGGAGAGAGAGAGTGAGAGAAAGAGAGAGGAAGGATGGAAGGAAGGAAGGAAGGAAGGGAGTAGGGAGGGAAGGAAAGGGACAGAAAAGAGGGAGGGAGGGGAGTCAGAAGTGATACTACTCTCCTGTTACCCCTACCCTAGCCTAGCCTGGAAGGGCTAGAGGAGGACCAGCTAATGTGCAGGCCCTAGTGCACAGTGAAAACAGGGGGGCCCTGTTTAAAAATTATTAAGAATTTCCACACATTGACCCCAGAGCATTAAATCAACAGCAGGGCTCTTCTGAGTGCAAGGTGAGACTGCACAGGTCACAGGTCCATGAAGCTGCCGCAGCTAGAGAGACCTCATTAAAGAAACCATCCTGCTGTCCCCATTAAGAAAATGCATGCAAATGGGTACAAGCTAGGTCTCAATGAATTATAATAATACTTGATGTTTATTGAGTATTTACTATTTGCCAGGCACTCCTCTAAGCATTTGATGTGTATTAACTAATTTATTACTCCAAAGTAGGTTTTATTATTATATCCATTTTAGAGATAAAGAAATTGGAGCTCAGAAAGGTTAAGTAACCTGCCCAATGTCACACAGCTGCTAAGTGGAGCCATGATTGCAAATCCAGTCAGTTGGTATCCAGAGCCCATGCTTTTAATCACTTTGCTCTTGTTTCTCTCAACATAAATACCACTTCTCCAGAACTCTCCAGTCCACATCCCCCCTGACTGTGGCAAACCAGGGCGAGAACAGAAATCAGTATTTGCTTACTTTTATGTCATAGTCTAAACCTACATATACATTCCAATATCTAACTTGCTTTTCATGGTTTTTTTTCCCTTCTATAAATAAAGAAGGGAAAAACTGGCCTGTGTAAAACAAAGTGAATAAGAGAAAGAAGAAAAGAAAAATTGTTGGTAATTCTATCAATCAGACATAACCACTGGTAATATATAGGTATATAGACATCTAGCCATCATACATGTTTCTCCAAATGCATTATACTTGAACTTTAAATGTAATAGTCTATCTTGGAGAGTTTTCCAGATCACTAGATTTTCTTAGCAGCATCATTTTTAATGTCCCTCCACTATGACATTTTATTTGTGTAAGATAATGTATGTATTCATATATTGTTGGACTTTGGCGCTGTGCACCATTTTTGTTATTCAAAATAGCTCTGGGATCATAATTGTGTAGGTAAATCTTTATATCCATCCATGATTATTTCCTGAGAAAAAATTCCTAGAATTTGACACACTAGGTCAAAGGGCAAATTATGTTTACTTAAGAAATTAAATTAAAACAAAACAAAAAGAAGACAGCACTGCCACCTTGCATTTCAAACATATCACTGATGGCCCGTGGTGATGCACGGAGGTTTCCTGCAGTGCACACACACTGGGACGGCCACTAACACTTTCTAATGATTTGTTTCATGCCTTCACACCACCTCTGTCCTGCCATCTCTGTTTTAG
Seq C2 exon
ATTGTGGCCAAGAAATACCGCAACTATGATATCCCGGCTGAGATGACAGGCCTGTGGCGGTACCTCAAGAACGCCTATGCCCGTGATGAGTTCACCAACACCTGTGCAGCTGACAGTGAGATCGAGTTGGCCTACGCTGATGTCGCCAAACGCCTCAGCCGATCCTGAGCACAGCCATTTTGCCCCATCCCCGCTGCAGAAGGACTCAACCACTCCCCTAAGACTCCAGCTTCATAGACTCCTCTGTATCACTGCCTTGAGGCGCACTTTTTATAATCAAGCCTCATCTTGCTGGTATCATGGGAACTCCAGCCTGCTATCTTTCATGAAGGTCAGCACCATCCCTGGCCTCCTCACATAGGAATCTAGCAGAAATGATAGACACAGTCCACCTTTCGGCCGGCCAGCCTGATCTGGGCTCAGCATGTTTGGGGTCAGTCAGTGTTGGAGAGCCCACATATGGGATTGCCACTAGCTTCTTCTGCCAATATCAAAATACCTTCTCAGATGCTTTAGAAACATGCAACACCAACTCCTTTTCTACCCTCCTCTCCGTCCATACCTACAAGGCCAAGGACAAACGCCATCTTCATCCTTCTTAGAAAGAGATCTATTACCCCATTAGGGGAGACAGAGAGAGTGAATGGAGGAGTACCGAGCTGGCTATGGACTTGGGTGTCTGGCAAACACAGCTTCAGTCTCACTACTTCTGACACTCTGGTTATTGGGCACTAAGGGCCAGACTGGAAAGTCACTTGAGACACATTCTCAGTTTGTTGCAGTGCCAGGAATGCTGCGCTGCTGCTGCTGCGCACCTGGCCCATGCTGTCCCTGGCTTCCATGCCGTCCAGGCCCTGCCAGAAAAGGAAATTGGCATGCAATTCTAAACTGCAGTGACTGGGATGGGAGGGGAGGGGAGCAGTGTTGATGCCAAAATACCCACGGGGTCTACCAGCCATGGGGTTTGCTTGCTTAGGAGTAGTTGTTTCAGAGGTGATTACAGGCCTGGGTTTGACTGTGCTTACCAATGAGTGGTTTTTGAGCTATGAGAAAGTGGATGGGAGTGGGAGGAGGAGAGATGGGTGAAGACAAAAGAGTTCTTTATGAGCCTCGATGTTCCCTGGTAAACTTTTAAAAAGGCCTTCTCTCATGATCTAAGTCTTGGACTGGTGGCATCATGTAACTGCTAACCTTACAGTAAAAACCCAAGAATGGGTCAAAAATGTCTTCCCAGTTTCTCCAAGCTGCTTCTGGAATGCAGGTCTGTCGGCTGGGTGCTCTCCAGCAGCTGCTCCTGCCTGATTCAACTGTAGCCTGTAATGGGTAAAAGCCACATTTAGGAGGTGGTCTGATCATAGAACACCTTAGGAAGAAAGTCCATGAGACTTTCTGACTAGGAAACCATGTGGTTTGAACTTGAAGAAAAATGTAGACCCATCTGGGTTAATTTTCCTACAATCTGACTCAACTGCCAGGTGAAAAAAAAAAGGAAAAATTTTTAAGCTAATATTTCACTCTTTTGTCATTCTCCTTAAGTTTCATCTCCTAAAAAGCTTACCCAGCCTGAGCTTGGGGACCTGTGCAGAGGAAACTAAGAAAAATGCACTCATCAACTCCTTCTCCCAGTGAACGCCCGGTGAGAAAATCCATTTGCCACAGGCCCTTACCTTCAACAATCCCCCTTCTATAGTGTTCGCTGGTAAAGGGTGAGGCTCCCAAGTGCTGGAAAGCCCCTGGACTTGGCTCATTTCTCAGCAAGGGCAGGATAGCACGGGTCCTTTCCATAGAAATATCAACAAATTCTAACCCAAGCAATCCCTGGACCTACCTGCCTCCAGGGATCTCTGAAGAAAAAAAGTAACCCATTGATCAAATCAGAGGAGAGGAAGCAGGAGGTCTCCTAGAGCCCATTGAGGAAGAGGAACTTTCTCAGTAGGACACTTTATAAGCCTGAGAAAGCTTTGAAAAGGCGGAATGAGTTGATTCATTTCCACCTCAAAAGGAACCTTTCCAGGTCCCCCTGGAAATTGTGCCCTGGAGATGTTTAACAAGGAGAACTGGTGAGGAAAGAGTCCTTTTTTACTGTAGGGAAAAGCCCCAAACTGGCCTCCTGGGGGATGAGGGCTGAAATGATCCCGAAGGCCTTTTAATTAGTGTGAAATCCTGCTGTACTCAGAAATCCTTCCCCGAATTTACAGCACAGGCAGGATGACCTAAGAGGCAGTTTACTTCCCTGAGACCCACAGTTGGGCTGTTCTGGAAACACATCTGTGAATCATAGCCAATTGCCACAGAGAAAACAGAACCAAGCCTCCGGTGAGGCCACTCCACCCCAGAGAAGTCTGCAGAATTCCAAGGACTCGGATTGGATGTTCAGAATTCAGCAACTGGAAAGTCCTTAAAAACAAACAGGCCAAACCAAATCAATATTGCTGTTTCTAGATGTCCCTTCTGTGGTTGAGCTAGTTTTACAGAGATAAATATATTAAGACAAGGAGGTGGGGGTGTTATATGATCAATGATAGCCATTTGAAAGAGAGGGAGGAGTACAGAAGGAAGGCACTTCTGGGTACTTAATTCAGAAATTTCTTTATATTTCAGCACTGGATTATCATATAATGCAAGTGACTATGGACTAAGAGTTAGTTATGGTGTCTTATGACTAGATTTATTATGGTATATTAAAGTAACAATAATATTAATATTACCTTCCTTTTTTTTTTTGTTTCAAAAGAGATCTTTCTCCAGATGCTTCAGCCTGTCTGGCCTTCTTATCATATGTGCAGCACATCATGTCTCAGCAACAGTGTGGTGAGGTCCTTAGGTGTCCCAAGAACAACTCAGGGAGCACGGGAGGGTCTGCAGTTGGGACCCCACAACTATACAGCTATAGGGTAGGAGGCTTCCTTTTCATTGGTCCTGAATGAATACAAATCGCTCAGAAAGCATTTTGGTGGCACAGAAAGGGGATGTATTTGTGTTGAGATCTTATTTTATTTTGTATTTATTTATCTTCTTTGACTTGCACAGCACTATTGGGGGTGGGGGAAGCAGGGTAGTGGGAGACGAAGGCAGAAGCAAGAGTCAAACTCAGAATGACTGAGTTGAATTCACTGTCTAGTCAGCAATGCCTGCTTCTGAGTTTGGCCCAGAGAGAAGGTATTGAGTAAGATTTTAATAACTGTAAAAAGTAAGCTGGATAAGTAAAATCATGATGGATCCAAAGCACAGTTTCTTCATCTCCTGATAAAGAAAGTCAAATGCTTGATAAATTCAGAGTCACAGATGTGAGCATAGCTATATTCTTTTAAACGAGAGGTAGAGTGACCTAGCACTAAGCAAATGAGCTGAAATGTCGGAAACAGAGTCCATCAGCTTATTTGGCCACACGATCCCAAACTAGTTTTATCTTGGGAAATGGCCCTGTCCTCAGCATTCCCTTCTTGTGCTGGTGGGGCCAGTGAAGTCTTGATCTTATCAGAAAAAGGCCACACCAAGTGCGAGTTTTCCCAGGCTGACTTTCCAGGCCCTTATCAAATGAAACAACAGAAGCTCTTCACAGTTCTGTGCCCCATGGCCACTCCACAGACAGACAATACCAAGCATCTTAGAACTGTCATAAGATAGGTCATGCCTGAAATAGATCTTGACCATATGAGAGTCCCAGAAATCAGCAAGGCCTGGACAAATAGAACTAAGAGAGAGGCAGAGGCAGGAAGCTGCGGGTCTATCTTGTAAAGAGTTTAGCATCACTGTGAGAGTGTGTGTCTAAAATTAAATTAAACTAGAAGCAGCAGGTGAGTATTTGGTAAGTACTTCTGTGACTCGCCTCAATTCCCACTGGCCAGGGGCCATCTCAACTGCACGGTGAATCAAGATGCTGGTGTCATCCTCCTTGGAAAAAGGAAATGTTAACTCATGGTTAAAACTAAGTACAATGATTCCCAAGGGATCACTTTCTTATTTTTTTAAATGACATTAAGGAGAATCTTAAGAAAGCATCAGAGAAAGACATGTGCATGTGAAGCACCCTGATTCTGATGTTAGGAAAACTTAAGCGAACAGGACCTGCTGCACACAGCCCCATTGTCTTCTATCCATTTCTCTTTATCATTCAAATCAAGCAACATGTGCCCTCCTCATCAACACACATTCTTCCCCTTTGTCAGTATGCATCTCCCAGCTTAGTGTCAGGATACTTTCGATTCATAATTATGTATGATCCAAAGTGTGCATAATTTCATTTAACGTTAAAGAAATAGATCCAATTCCTTTCTTGCAACCAAAAATAAATAAAATACGTTGCCTCAATATAAGGTTTGGGCTATTCTGTGTTTCTATAGAAGCAATCTGTTTTTGGTAAAATGTACTTTTAAGGATCCAGTCATCTGAAGTATTTTATGTAGAGTTAGAGATTTCACAATATTGACTATACATATATTTAAAATATAAATTATCCAGCTGATGTTTGAATTTGTCTTACTTTCCTGGCCACCTCGTTGTCCTATTTTATAAGCTGGGGAGTTAACTAGCTTAACAAAAGATGCTTAGCTTTTGTAAAAGAACAAGTGTTTCATTTTACAAAGACACTCCAAATGATAGTTACTTGATTTTCTCGAGACCTTTAACTATGGTGATGAATAACAGGACTTGCTTTCAAGCCTTAATAAATGTAAAATGCCTTTTAATGAAGATACAGCTGAGTGTTTTCCTCATGAATCTGAACCAATTACCAATTTGTGTTCCAGTCTTGATTGGTATTGACTGATTCAAATAAAGTTGGTTTATTTTCAAATATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112782-CLIC5:NM_016929:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(56.1=100)
A:
NA
C2:
PF134101=GST_C_2=PD(21.5=41.1)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)