MmuINT0044754 @ mm9
Intron Retention
Gene
ENSMUSG00000060407 | Cyp2a12
Description
cytochrome P450, family 2, subfamily a, polypeptide 12 [Source:MGI Symbol;Acc:MGI:105055]
Coordinates
chr7:27817506-27819183:+
Coord C1 exon
chr7:27817506-27817682
Coord A exon
chr7:27817683-27819044
Coord C2 exon
chr7:27819045-27819183
Length
1362 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATC
5' ss Score
4.41
3' ss Seq
CTCTCTCTCTCTCTCTCCAGGAG
3' ss Score
14.44
Exon sequences
Seq C1 exon
CTCTATGACATGTTCCATTCAGTTATGAAGTACCTGCCCGGACCACAGCAACAGATCATCAAGGATTCTCATAAACTGGAAGACTTCATGATACAGAAAGTGAAGCAGAACCAGAGTACCCTGGACCCCAATTCCCCACGAGACTTCATTGACTCCTTTCTCATCCACATGCAAAAG
Seq A exon
GTGATCCCAACATCTGGGGATGGGACATCTAAACCAGGGCAGCTGGAAATCACCCTAGAAGAGGAGGAACAGAGGCCCATTAAGTCCCCATGATGTTCCTCACAGACCCGATCATAGTTAAACATCACTCTCCCATCTATTGAGCCTTCCTTATGCAAGCCAGGGTATGGGCAAGCAAATTAACATGCTAACCAATATCCCAGTGTTCCCCTTTGAGACACTGTTATCAGTGCATCCTGCTATTTGCCTAGTTAGCATGCACTGAAGCTACTGTTGAAGATCCTGTGGAGCTTAAATTTCACAAAGAGGGAAAGTGTGCCCAGAGTTGCATGCTGACTTCATGCAGCCAGAAAACCATGCACTCTTGCCTCTCTGTGGCTCTCAGGCTTTTACTCTTGGCCATGTGCTTTCCAGCATTTCATATCTCCATTAGGAAATACACATCAATACATATCAGTGGCCTAGGCAACTTAAGTGTTTTATGTGATATCAAAGGACTTCTTTCACAACTGAGAAGAAAGGACATAGAATTCTATTGCACATGAAGGTCAAGGGTCTGTTTAGGGGCTCTTCTATGAGTTGTTTGAGGGGGGAGAGAATGAAGTTTAAACTCTGATCTGTGTCTCAGATCTATCTCTAATAACACACTCCATCATGGCATCTGGGTTCTTTCTCACAGTCCTTACCCCTCACTGTCTAAATATCCCAACCGTGACATGAGTGGCAGACAGTCAGTAGACAGAGAAGTGAGCAAAGCTTCTCATCCAAACCCAAGGCTCCACACAACCTTGAGATTACCTTTCCCATAGTTGTCTGGACCCTTTGAGAATAAGATCCAAAGAAAAGTCCAGAAATGGTGCCTGTTGGGTCACTCTCCTCCATGAGGAACTTAATCCACAGTTGATGGCTGTTGAGAAAAGAGGAAATCATACTCCTTAGTGGTGTGGCTACTAGTAAATTATCCTTTCTCAAGTAAAGAACCCTTCACCCATACTCATGCAGCCAAGCCTGGTTATAAGCAGTTGCCCAACAAAAAAAAAAAAAAAGAAAGAGGCTTATTAGGGATAAGAAAGAGTTCCACAAAGTGGAAAATAGAAGATAATAGAGGGGAATATGTTTAAAGTGCATTTCACATATATGTCTAAAAAATGAGGACTCAAGGTCCAGTGGGTGTGGAAGGGGATTCATCTGGGAAGGGGAAAGGTGTGAATATATTCACAGTAAAATAAATGAAATTCTCAAAGAATTAATTAAAAATATTTATAAAAGAATGACTAGAAAGTTTAATATTCTCCAAGAGGATGACAAACTGATAGATTTTGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAG
Seq C2 exon
GAGAAATATGTTAATTCAGAGTTTCACATGAAGAACCTAGTGATGACATCATTGAACCTCTTCTTTGCTGGGTCTGAGACAGTCAGCTCCACACTACGATATGGCTTCCTGCTACTAATGAAGCATCCAGATGTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060407-Cyp2a12:NM_133657:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGACATGTTCCATTCAGTTATGA
R:
CCTCTACATCTGGATGCTTCAT
Band lengths:
314-1676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: