MmuINT0044806 @ mm9
Intron Retention
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:27542206-27544217:+
Coord C1 exon
chr7:27542206-27542379
Coord A exon
chr7:27542380-27544054
Coord C2 exon
chr7:27544055-27544217
Length
1675 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGCCCTTATGGTTTGGCAGCTT
3' ss Score
5.91
Exon sequences
Seq C1 exon
ATGGAATTCAGTGTGCTGCTCCTTCTCGCTCTCACCACAGGCTTCTTGATATTCTTAGTCAGCCAAAGTCAGCCAAAGACCCATGGCCACTTCCCACCAGGACCTCGTCCCCTGCCCTTCTTGGGTAACCTCTTGCAGATGGACAGACGGGGCCTTCTGAGCTCTTTCATACAG
Seq A exon
GTGAGCCATCCACAGGGCCTGAGACCTGTGGGCTTAGCCCAGGTTTGCTCTTGGAGGTCTCTCAGCAGGAAGAGCAAGGGGCTCCTTCCAGGCTGTATATTCAGGTGGGAATGTCACTGAGTGAACAGTGACATGCTGTCTCATAATGATGGTACTCAGATGGACAGGCAAGTCTTCCAGTGTTGGAACTGTTGTGGACACTGTGCTTAGAACACGAGAGGTGTGAAGGTGTTGAGGTGTAAGTGTGTAGCTTCACTCCTTGGAGCTTGTCTTTTCTAGAAGAGAAAGAAAAATGTCAGAGGTATCAACCATAGGTTTTGCTCCTGCCAACAAAAGAGATTAGCCTGAGGTGTTCCAGGACAAAGAGGAGGAGAAGGGCGGGAGGTGAGGTGAGTAGGTAGATAGGTAGGTAGGGCTAATCAGCTATAAACACCATGCACTATACAAGCCAAGGACACTGGCACTGTCTATACCAGTCTCTGTACTGTTGCTTCACAAGTGGTATTTTGTGTTAAATTATCACTTGTTCATAATAATCAATGTGCAATAATCAATGACTATCCATGACCTGGTGGCCCATTAAGAGAGCAGATATAGTGGTAGCAATCCCAACTTCTTGCCCTCCTTTGGTTTTTAACAGATCAGCCACCTGGATTCACTGGCATAATCATTCATTTATATTTAGCTTTTGAGACAAGGTTGTCCCACTTTTCCCAGGGTAATCACAAACTCATGATCCTCCTCCAAGTTTTATATAATATCTTGTATCTGATCTGTAGATTGTTCTTTCACTGTTCCATAAGGTATGGTGCTGCAACCCCACCTAAAATTGTAAATACATCAACATCAAACATATAGAGCTTTTTCATAGAATTATTCCCAAAACAACATGTGTGCTGACCATTTCCACAGCATCTAATTTCTATTAGCAGCATGGAAATCTAGAATGAGCTAAAGGTCACAAGAGGATGAGGGTGGGTTATTTGCAAATGTGCACCATTCTATTCAAGGGCTTTCAGCACTGGAAGGTTTGGATATTCCTGGTACCAATTCCCTAGAGATGCCCAGAGACAACTGCACTGCCAGATAGTTTCCTGATTTGTACTGTAGACATGCTTGAAGTTAGGACCACCAGCAGGGGTCATCCATTTTCCCTCCCAAGTAACCCACTGAATGGGTCAGGGCCATTCTCTCTGACTGTTTTCAGAAGGCATGGTATCTAGATAAGATGTCAGGAACTGCTGGCCAGACTGAAGGGTGTGGTCATAGGTCTATATCTACATCTGTATCTATATTCATATCTATATATAGATCCATATCTATTTATTTTGTTTTGAGGTAGGGCCTTAGGTAGCCCAGGAAGGCTTCCAAGTGGATACATACCCAAACATAACTACTCATTATATGGCCTCTACCTCCTCAAGGTTGAGTTTATAGTCATGTGTTTAGAGCCCTACTCAAACTCTACAGTTCTGGTGCATTGATTAGAACATACAACCAATAGTGCAGACCTGCTGGGTAGTGAAATAACCCTTCAACTCTTAGGTCCTCAGAAGGGGAAGGATGGCCAGGAGAGGAGATGCCTATTTATCAATCTGTATCTAAGCATTTTAACGGTTTAACAACAATGTCTGTGCTGACTAGCCACAATCCTGGTGCCCTTATGGTTTGGCAG
Seq C2 exon
CTTCAAGAAAAATATGGAGATGTGTTCACAGTACACCTGGGACCGAGGCCCGTGGTCATGTTGTGCGGGACAGACACCATAAGGGAAGCTCTGGTGAACCAAGCTGAGGCTTTCTCTGGCCGAGGGACAGTTGCTGTGCTTGATCCAATTGTTCAGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704-Cyp2b19:NM_007814:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.8)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAATTCAGTGTGCTGCTCC
R:
ATCCCTGAACAATTGGATCAAGCA
Band lengths:
334-2009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: