MmuINT0044838 @ mm9
Intron Retention
Gene
ENSMUSG00000042248 | Cyp2c37
Description
cytochrome P450, family 2. subfamily c, polypeptide 37 [Source:MGI Symbol;Acc:MGI:1306806]
Coordinates
chr19:40066914-40068377:+
Coord C1 exon
chr19:40066914-40067097
Coord A exon
chr19:40067098-40068214
Coord C2 exon
chr19:40068215-40068377
Length
1117 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CATTTTCTTTCTATTTCTAGTTA
3' ss Score
8.87
Exon sequences
Seq C1 exon
AGTAAGAAGAATCTCCATGGATCCAATCCTGGTCCTGGTGCTCACTCTCTCCTGTCTGTTTCTCCTCTCACTCTGGAGACAGAGCTCTGAAAGGGGGAAGCTCCCTCCTGGCCCCACTCCTCTTCCAATTATTGGAAACATCCTTCAGATAGATGTGAAGGACATCTGCCAATCCTTCACCAAT
Seq A exon
GTAAGTATGCCTTATGCTCCTCCAGTATTTTGCACGGGGATATATTAGTCATGATGCTTTCAATAAAATTCTATCACTGGAGCAATATTATTTTAAAATGTTAAGTAAGAAACTGTAATGTGTCTATTTTGTCACTAGTCCTGGTTGGTAAATTACTAAAGAGCAAGGTTTCAGGTTGAAGAACAGTTTTGTCATTGCATTTTATAATATAATCAAAGAATTTTAAAGTTATGCTTATTCAAATCCTTATTTTCTAAACATTTCCTATTATTTTGGCTGAAGGTGGAGACTGTTGAATATTTCATTCAATCAGTCAGAAGTTTAGACACCAATTGTTCCTGGATTAGCATGTGATGCTTAACTCTAAAGACCTAACTGATGCTTGACATGAGGGGAAATCTCTGGACATGGCCTCACACGGGAAATGAAAGCCACAAACAGTGTGTCATAGGATATATCATAGCTTGCCAATCTATTTTTATTACTTACAAGACCTGTCCCTTGGGTCCAGAACACTTCCTGGTGATAATATGTTTTCTCCACAAGTGCTGCATTCTGTGGTGCACTTGCTATGATGCCTGCTTTCTATAGGTTGGTAACAATTATAAAGAACTAGACACTTTCATTACTTGTGACTGAGGAATTTAGGTTTCATTGTCATGGGTTCTGCTTTTTCCATAGGAGAAGTTTCACATCTAATCCTGCTGCAGTCATATGACTACTGATGGCTGTTTCTGTGTGAAGTGAGCATGAGCATCCAATAGAGAATAAGAAGAGTTCTATTTAATTCTTTACTTTTTTTTGCAATAGTGCCCTAGAAATGAAAGTACAATTATCATTCTTCAGTTTCTTTGTGAAATAAGATGAAGAGACATGCCTAATATCATAGTGTGATATTTTACAGTCATCAGTATGTCAGCTGTCTGTGTGGTCTCTTGTCACACTATAGATCATTCACATGTGATAAATACTCAAAATTCAAAATACATGCAATTAAAAAAGAGTCTTTCTAGATAAAAATATTATTGCACAGTACTATTACCAGTCTAAAAGTGTTCTAAACCATTGAGAATAAAGTGGCATTTTCCTAATATTTCCATTTTCTTTCTATTTCTAG
Seq C2 exon
TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGATAAAGCTACTAATGGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042248-Cyp2c37:NM_010001:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=46.4)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAATCTCCATGGATCCAATCC
R:
AGTAGCTTTATCAAAAACTGGGAAC
Band lengths:
334-1451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: