BtaINT0004435 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MEU8]
Coordinates
chr26:16131103-16132443:+
Coord C1 exon
chr26:16131103-16131134
Coord A exon
chr26:16131135-16132280
Coord C2 exon
chr26:16132281-16132443
Length
1146 bp
Sequences
Splice sites
5' ss Seq
TTGTTGTTC
5' ss Score
-14.25
3' ss Seq
ACAGGCATCTCCATTCCCAGCTC
3' ss Score
4.43
Exon sequences
Seq C1 exon
TGATTTCTTTCCAGAAATCATTTACTATATTG
Seq A exon
TTGTTCAGTTGCTCAGTTGTGTCCTACTCTTTGTGACCCCATGGACTGCAGGATGCCAGATTTCTCTGTCTTTCACCACCCTCCAGAGCTTGCTCAAACTCAAGTCCATTGAGTCAGTGATGCCATCCAGTCATCTCATCTTCTGTCGTCCTCTTCTGCCTTTAATCTTTCCCAGCATCAAAATCTTCTCTAATGAGTTGGCTCTTCACATCAGGTAGCCAAACAAAGTCCTGGAGCTTCAGCTTCAGCATGAGATTAGTGATTTCTTTCCTGAAATCATTTACTATATAAGCTGTGTGTTTTGTTCAGATGACCAGGAAAACAGAACTTTTCTGAAGAAGGGCATTGTGCCTGGTGTTAAGGAATTAACTTAGGATTAGGATGATCATGGGGGAATGAAAGAAAGAAGTCATCAGTTAGGGTCCCACTGGCGGCAGCAGCATTCATTTGGATTCTGCAGGAAACTGCCATCTGTATCCTGTGAATGCTGCCGCACAGAAGGTGTTGTTCTTCCATGAGATGCTGCATGTCCTGGCACTGCCTCTATGATGCTTCCTCTCTTTCTGTGTTAGTGATACCAGAGGATCTCAAACTAGGCTGGGCATTAGAGTTATATGAACTTATTTTTTAAGTTATAAATTTCTAGTATTCATCATAGGGCTACAGAGTCAGAATTCTAATGACCGCTTCATGGGTGATTCTGAAGCAGTGAGCTGGCTGTTGGTCCAAAAGGTGGACCTTAAGGATTGCTATATTGCTTCTCAAGGATCAGAGGGTGACTATGATCTTCAAATTTGAATCCTCTAAATATTAGCCCTGGGGTGCTGGACATGGAACAGAATTCCACAACCTTGGTTTCCTTATTTATAGTAGGGCAAATAAACCCACTGAAAGTGCTGATTTGAGGATTAATTATAACCTGTGTACCAGCTACTTGGGCCATTACTCAGCATTTCAAGTCATCCATAAGTAGAACCTATAACAATTACCACCATATTTCTGCATTAAATTCTGAATTTAATACATAATTAGGCTGTCTCTGGCAGAATAAAAACATAATAGCAGGATGATGATACATTCTGCATCAGGCACAACATAGTATCTCATACTGACTTCTTTTGCTATTACAGGCATCTCCATTCCCAG
Seq C2 exon
CTCTCAAAAGTCTACGGCCCTGTGTTCACTCTGTATTTTGGCATGAACCCCCTGGTGGTCTTGCATGGATATGAAGCAGTGAAAGAAGCTCTGATCGGCCTGGGAGAGGAGTTTTCTGGAAGAGGCAGTTGCCCAGTGATTCAAAGAGCTTCTAAGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020375:ENSBTAT00000008918:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(2.2=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]