MmuINT0044878 @ mm9
Intron Retention
Gene
ENSMUSG00000054827 | Cyp2c50
Description
cytochrome P450, family 2, subfamily c, polypeptide 50 [Source:MGI Symbol;Acc:MGI:2147497]
Coordinates
chr19:40165036-40165595:+
Coord C1 exon
chr19:40165036-40165185
Coord A exon
chr19:40165186-40165434
Coord C2 exon
chr19:40165435-40165595
Length
249 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AATTGTTTCCAAATTTTCAGGCT
3' ss Score
6.8
Exon sequences
Seq C1 exon
GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG
Seq A exon
GTAAGTGCAGGTTTAGAACCTGATCTAGGTATGGCAGTATGAGTGATTTTGTTCCTGTCCTATTTGAATTATTTTTTTCTAATGAGGTGTATAGGTCTCATGTTAATGTTTCAGTGAATGGCCAATCCATGCATTGCCCTTAGCATAAATGTAGCATAAAATTTATCAAGTGTCTTAACATGATAACAAGGGCATGGTGTCTTCTATGTGTATTTTAATGATATTTTACAATTGTTTCCAAATTTTCAG
Seq C2 exon
GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054827-Cyp2c50:NM_001167875:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(27.0=100),PF0006717=p450=PU(0.5=1.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTATGGAAAAACACAAGGCGC
R:
CCAAGGGGTGCTCATTATCTTGG
Band lengths:
284-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: