MmuINT0044952 @ mm10
Intron Retention
Gene
ENSMUSG00000060613 | Cyp2c70
Description
cytochrome P450, family 2, subfamily c, polypeptide 70 [Source:MGI Symbol;Acc:MGI:2385878]
Coordinates
chr19:40164352-40165501:-
Coord C1 exon
chr19:40165328-40165501
Coord A exon
chr19:40164494-40165327
Coord C2 exon
chr19:40164352-40164493
Length
834 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
CTCTCATTTATAACTATTAGGAA
3' ss Score
6.04
Exon sequences
Seq C1 exon
CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAAAG
Seq A exon
GTACAAGTGATCTTGATTTGCTACTTCACATTTGTGGGTGTTCTGACTTAGCTTATGTTGTCCTGGTGAAAGTGGGATGTTCCAACTAATGTTTATATAGAATTATATAGAATATTCAGGGATCGTTAAGATTCTCAGTTTATTTAGAATTAGAAAATTTATGTTTATCATGTTCTAGGTTAGTTCTTTACTTTGAGGAAAATGAAAACACACCCATTCAAGAGTGATGAGAACCTGCCATTCTGTGTAAATGAATCTCCATGAACAGCAGGTGTTATGACTTAGGGAACATAGAAGTTTTCTTTAAAGAGACCCTGGGAACTCTTTGCAGTTGAGCTAGGCCTTGAGGAAACTCCAATTTAGATCAAAAGGAGAATAAGCTAGAGGGTGGTAATTGTGGTCATTAAGTGAGCTAACTTTGAAAAAGTGACATTAATTTGAATTATGGTGATGGATGTGTGGAATGAAGAGATTAAAAACTGTGATAGAGTTTGCATGTGTGTAGTCCTGAAGACTTTAAGCATAGTGAACAGTCAATAGGTGCTAGAACTGATGGTGTTTCTAAGTGCCTTGATATACGTTACACTTGAAAAAAATGACATAGGAATTAATATCCTTAGTGGGTGAGAAGTGAGTAACAAGAAAAACCTTCGAGTTTTGTCCCTTTGATTTTGTTAAAACTGTGTGAAGGAAGCCTAAGCTAGAACACTCTAATGTCTAGCTTTTCTACAGAATGCTTACATCATATTGTATTATTTTTTATTACCTGTAAGTGTTTAAACCAACCAAATGTACAAACAAACAAAACTAATCCCTCTCATTTATAACTATTAG
Seq C2 exon
GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060613:ENSMUST00000051846:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCAGTGCCTACCCTATT
R:
ACTTCTGGGTACTTCAGCAGGA
Band lengths:
311-1145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types