RnoINT0044309 @ rn6
Intron Retention
Gene
ENSRNOG00000021924 | Cyp2c22
Description
cytochrome P450, family 2, subfamily c, polypeptide 22 [Source:RGD Symbol;Acc:620368]
Coordinates
chr1:259269443-259270619:-
Coord C1 exon
chr1:259270446-259270619
Coord A exon
chr1:259269585-259270445
Coord C2 exon
chr1:259269443-259269584
Length
861 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
CTCTCCTCCAAAATTATTAGGAA
3' ss Score
6.09
Exon sequences
Seq C1 exon
TTGTGCAGTGCCTATCCTGTTCTATACTATCTCCCGGGAATCCATAACAAATTCTTAAAAGATGTGACTGAACAGAAAAAGTTCATCTTGATGGAAATAAACAGGCATCGAGCATCTCTGAACCTCAGTAACCCTCAGGACTTTATTGACTATTTCCTGATTAAAATGGAAAAG
Seq A exon
GTACAAGTGCCTTGACTTGCTACTTCACACTGTGGGTGTTCTGACTCAGCTCATGTTGTCTTGGTGAAAGTGGGATGTCCCAACTAATGTTCCTTCTGGTGACATATTCATTACTTGTGGAAACAATTTCTTAGGCAAATTATATTTGGGGATCATTCAGATTCTCAGTTTATTTAGAATTAGAAAATTTATGTTGACTATGCTCTAGGTTAGTTCTTTTCTTTGAGGCAAATGAAAACACATACACATCCATTCAAGATGATGATAACATGTAATTCTATGTAAATGAATCTCCATGAAGAGCAGGTGGAATGACTTAGGGGATACAGGATTCTTTTTTAAAGATACTCAGGGAACTCTTTGCAGTTGAACTAGGCTTTGAGGAAACTCCAGTTTAGATCAACCGGAGGATAAGCTAGAGGATGGTAATTGTGGTCATCAAGTGAACTAACTTTGAAAAAGAGACATCAATTTGAATTATGGTGGTAGATGTGTGGAATGAAGAGATAAAAATAGTGATAGAGTTTGTATGTGTGTAGTCCTGGAGACTTTAAGCATAATGAAGAGTTAACAGGCGCTAGAACTGATGGTGTTTCTAAGTGCCTCAATACACATTACCTTGAAAAGCATGACAGAGGAATTAATTTCCTTAGTGGGTGAGAGTGAGTCACAAGGAAAACCTTGGAATTTTGTCCCATTGATTGTGTTATAACCATGTGAAGGAATCCTAAGCTAGAACACTCTAATGTCTAGCTTTTCTACAAAATGCTTGCAGCATCGTATTGTACTATTTTTTGTTACCTTTAAACCAACCAAACATACAAACAAACAAAACTAATTTCTCTCCTCCAAAATTATTAG
Seq C2 exon
GAAAAACACAATGAAAAGTCTGAATTTACCATGGACAACCTGATAGTCACCATAGGTGATCTTTTTGGAGCAGGAACAGAGACAACGAGTTCCACCATAAAATATGGGCTTTTGCTCTTGCTGAAGTACCCAGAGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021924:ENSRNOT00000054724:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAGTGCCTATCCTGTTC
R:
ACCTCTGGGTACTTCAGCAAGA
Band lengths:
310-1171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]