BtaINT0046177 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023549 | CYP2C19
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 19 (CYP2C19), mRNA. [Source:RefSeq mRNA;Acc:NM_001109792]
Coordinates
chr26:16362560-16363871:-
Coord C1 exon
chr26:16363695-16363871
Coord A exon
chr26:16362702-16363694
Coord C2 exon
chr26:16362560-16362701
Length
993 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCCTAATACATCATTGCTAGGAA
3' ss Score
3.81
Exon sequences
Seq C1 exon
CTCTACAATACTTTCCCCTCTTTACTACATTATTTCCCAGGAAGTCATAATACAATATTTAAAAACATGACTGAGCAAAGAAAGTTTATTTTGGAGGAAATAAAGAAACACCAAGAATCCCTGGACCTCAATAACCCTCAAGATTTTATTGATTACTTTCTGATTAAAATGGAAAAG
Seq A exon
GTAAAATGGAACCCAGATTTGCTACTTTATCTTTGTGGGTGGAGTGATGTGACACATGGAATAGCTTTGTTCTTCTCAGTGAAATTGGTTTATTAGAACAAATGCTCCTTCTTAAATATGTGTTCACTGCTTGCACACACAAGACTGAATATTGCTTGTACAAACCATAGGGGATGTCTTGAGATATTTATAAATTGTCACTGAAAATTATTCGGAAGTTTTAATATTTACCATGTTAAAGCTGGTTCTTTATTTGGGGACAGGTTGAAGCACTCACACACAGACAAATAGGCACATTCAAGATTATTGATAGACAGCATATTCTTTTTTCATCATATAAATTCCATGAATGAATGATGTAACAAATGAGAGAAAGTAGGAATTGGTGGGAATCAAGAAAGGCTCACTGTTGGAAAGATAGTAGGAAACAGCTGAGGTAAGTTTTGAGAAAACTCTGGCTTAGATTAACAGAGATGACAAAATTGGTTCAGGGAATGATAAGTACAGAGATGAAATGTGTGGAATTTTTAGAGATTATCTTGATTATAACTGAGAAACTGTCATGGGTGTAATGACTGATGATTTTGGGAATAGTATTGCAGTTTGAGGGTAGGTGATTCTGAATACTTGAGTGAGAACTTCAGATATGATGAAATAAACAATAGATGCTTGAATTGACAGTGAGTAGCAGTGATTACTTGATAAGAGAGAAGTTAGAAATTACTGAAGCACTGATTTGCTCTAGTGAGTATCAAAAGTGAAGAATCAGAAAGGACTTGGAAGTTTAACTCTATGTTTTAACGGAAGTAATTCTAACAACTCATCTAACTTTACTTTCATCTATAACACTCTGTAATGTTTGGCTTAATTTGTCAGATAATTAAATTTTTTAAAAATTGTGATGTTAAAAAAATTATGATGTTATATGAAATTATTTTATGTTATTTATAAGGTTCTTTTATTTATCAAGTACTCCTAATACATCATTGCTAG
Seq C2 exon
GAAAAACACAATAAACATTCTGAATTTACCATGGACAACTTGATCACCACCGTATGGGACGTGTTTAGTGCTGGAACAGAGACAACAAGCCTCACTCTGAGATATGGACTCCTGCTCCTGCTGAAGCACCCAGAGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023549:ENSBTAT00000032167:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATACTTTCCCCTCTTTACTACA
R:
ACCTCTGGGTGCTTCAGCA
Band lengths:
310-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]