RnoINT0081456 @ rn6
Intron Retention
Gene
ENSRNOG00000001466 | LOC100361492
Description
cytochrome P450, family 2, subfamily c, polypeptide 55-like [Source:RGD Symbol;Acc:2320073]
Coordinates
chr1:258242851-258246955:+
Coord C1 exon
chr1:258242851-258243027
Coord A exon
chr1:258243028-258246813
Coord C2 exon
chr1:258246814-258246955
Length
3786 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AATGAAATAAAAATTTCCAGGAA
3' ss Score
3.3
Exon sequences
Seq C1 exon
GTTTGCAATGCTATCCCTGCCTTCATTGATTATCTCCCAGGAAGCCATAACAAAGTAATTAAAAATTTTGCTGAAATAAAAAGTTATATTTTGAGACGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGTTTTCTGATCAAAATAGAACAG
Seq A exon
GTAAAGTGTTATTTGTCAGCTTGCATTTTGTGTTTCAATTGTCTCTGTTTTTATTGGGGAAATTCAACTTCTCAGGTAAGAACCACTTGGTATGCAATTTAGGATCCTATTATGGACATGAATTAGACTAGCATCATTTAAGATTTAAAATTGAATTGTTATGCAATCAGAATTATTTAATAAAGTTATATGAGGAAAAGGAATATAACCTTCAGGTGAGTTAGGCATAAAGAACTTAAAATGCAAACTATTAATCATTGATGTAAAAAGTAGACTTGATCATAACTTGATCATATAGAATAATGACAAACATGTTCTTAAAGCAGCAGGCTTCTGCAGTGACTTGGGCTTGGCACTAATCTTTGAGTATTTGGAGTGAAGCATCAGGGGTGAGAATTTAAGATGTGTAATGTGAAGTGATGAGAGACTTAAATGTTTGTGATGACACAGAGGAGGGTAAGAACCTTAGCTGTTCTAACCAGAATCGATTCTGGACAGATAATCAGGTAAAAAAAGTCTTTGAGGTACTTTGAAAATGTAGGTATGGGCATGAAGAAATTATACTTATTTAGGAATTTGTTTAAAACAAAACAAGAGTGCAATGCTCTTGCTTCCTAAGGGAATGACTGAGTTCAGTAAGTGATATCTGAGATCAGAATGGAGTTCAAGAACCAGCTACAAGCCGTTTTTTTCCCCTTTGGACTGTCTTGATGGTAGTTTGCATTATGGAAAGATAGATTCTGAAACAATGTCACTAATCCTGGATTATTCTCAGCCATCTTCAAAATTTTAAATTATGTATGTATTTGTGTTCACGGGTGTTTTGCATACCAGAAGAGGCATCAGATCCCATGGGACTACAGTTATAGATGGTTATGAGCCACCATGAGGTTGCTGGGGATTGAACTCAGGACCCCTGAAAGAGCAGCCAGTGCTCTTAACTACTGGGCCATCACTCCAGCCCCACCATCTTGCATTTTAATCTATCTCATATTTTAAAGTTCCACTAATTTGTTCATAGGTACTTGGCTGTTCCTAATGGATAATGCTGGAGATAACACAAGAGCAGGCATCTCGGTCACTTATTGACTTCATTTTGGTTTTGTATGTATAAGGAAGTGTGAAATAGCGGAGTCACGTTCATTTCATTTTTACTCTTTTGAGGAACCATCTTTCTGTTTGCTACGATGAGTGTAATGGTTTACATTAGAATGGGAATGGACAATGTTGCTTTTGCCTGTTTCCTTACCTGCACTTTCCAATGTTAAAATAGTCTCCCCAGTGCAGTGACTAGCACTGTTAGGGGTCCTTGCATAACTGTATAAAGCAACCATTACTCCGATAGTTTAGAGAACCACAGGTATGTTTAACCCCCTCTGGCCTAGAGTCACTCACTTAAGAGTCAACTTACTGGGAACCTTTGAGATAGTGTACCACTTATGGCCTTCAACCTTTACTTTTCATTTTGTGGAGAAATATGACTATGAATAATTTGTTAGTTGACAAGTATACTAGTCTCTATTCTGGAATAAATATATTAAATGAATAAATTTACATAAATAAACAAATATGCATTTACATATTAAACACAAATATATCTAAATATATTTTAGATGTAAAACATATAAATACACTTACTGATTTATGTATATTGATGTATTAGTAGGTGGAGAGAGAATTCCTAGTCTCTTTTCTTTGTGTCACTCTCTAAAACTCTCACTGGATACAGTGATGCATGGTCTTCATTTCCATGTTTCCACTGAGTATATGAGTATTCATGTTGATGATGAAGATATTTTAGTATTAATGTTATAAAATTATGCATATGTGTGTTTGTTCATACACATGTCAAAGGCAAGTTTTGAAATCACAGGTAAACTGAGGAAGGCATTATTTTGTTGCATAGACAATTTGGGTCAGTGCTAACAGCAGCCAAAGGGGTCCCTACTGACAGTGGCAGGCAATTTACAAGGTCAACACTGGTAGTGCTGATGGGCGCAAACCTTAGTTAGCTGGGGCTGATATTCTCTGTGCAAAAAATTCTGAACTTTTTTAACTGTTAAGGGGCTGGTGCTGGGAATTAACTGCTGCTCATAGCAGCAGGGGATTCGTAAAAGGGACTTAACTATTTCGGCAGGCAACTAGAAGCTCTTAGTTTTTTAACTCAGGAGCCACACTAGCAAAAGGCTCAGGGCGCATTAATTCTTTGTGATCTAGTGAGAAAGAAAAAGAAAGTCATGCACACATTCATCCACACTGGATGAAACAGGAAGGGGCTTCAGAAAGCAAGTTTCACTAGTTTGAGATGTATACACACACACACACACACACACACACACACACACACACACACACACAGAGGCATGCATGCACACATGCATACACATAAACATTAAAACATATATACGTCTATATACATGCAATTGGTGGATACAGCAGAGCCCTGACCTCACTTAACGGTATACATACATAAACATGTTTGGTGGATGGGGAAAAGCTCCAACAAACTCGCTCCCACACCTTATGTGTGTTCCCTTGGCTTTTTATATCTTCTCAGAAAAAAGTTCTTTATGTAAAAAATTACCTCACAGATAAAAATGTTACATGAGAGGAAGTTACAGCAGGATAATTGGTTACATAGTTGTTTAAATATTTTTACATTCCATAAGTTCGTAGTAGGTTCAAAGTAATAGTTCATGTCATAGGATGATAACAACAGAATTGTTCATATGAAGATTCCTACCTCACTAAATATTTATCAAATTTTTAGCTCCACATGTTCATTATAAATTTAGAGCAATATTTTTTATGTCATAACTTAGTAATATTTTTGTTAAGAGACAAATCATGTCTTATGTCTAATTATTTTGAAGGCTTACATAGATAAACTAGTCAGTCACTTATTTTCTGTTCTTGCATCCATTATAAATTGCCAATTCCTAGTTTATGACCACAGTTAGCAAGATTAGTGGCCTTATTTCTAACCTAAAAGAAATGTTTCCCTTGATTGTAAATTTGTTTGAAGCCTATTTCTCATCCCAGTGCAATTTGTTCAGGACACATGAGGGTTTACAGAACTTTATTTGCTGCTTTTTTTCTTCAGGGGGCTTAAAATTACCTGAATCAATGCAGGAATTCTATACAATTTTTTATCAGGAATTAGAAAATCACCAGTTCATCTAAACAGCATTATTATATGAATGTATATCTTTGTATTGATTCTGCAAGAAATATGTCCAACAGAATGAGTAAAAACCCAGAAAATGTTAGGCTATGTCAGATATAGGAGGGATATGGTATGGCAGAAAAATCATAGCAAGAAGCAATCTTAGGACCAAGTCTCTTGGGTCCATGCTTCTTCAGAGCACACTCATTGCAACCATGCAAAACAGTGGGCCATCTTGTAACTTGTTTGCCACAGCCTTTCTTGCATAGCTGCTACCACAAATGGGTGTAGATGACCATGTTCCAGGTGATGTATACCACTCCATTGCCATATGTGTTTTAAGAAGGAATGAACAATTTATATCTGTGGTTATTTTTCCTATTTTATTGATGTAACATGGTCTGAGAAATTTGAATTTTGGTACAAGGAAGAAAGAAAGGCAAAGAAATCAAAATTGAGTTAGTTAACTTACATTCTCTGCCATACTGTACACTTGCTGTGATATTTTTACAATGTCCTCATGTTCTAAATTTGCTTATCTGTAGACCAACTTGTATTATTTGGAATTTGTTGAAATTTAATATAATGGCAATCTCTAATAATGAAATAAAAATTTCCAG
Seq C2 exon
GAAAAACACAATCCCTGTACTGAGTTTACTATTCAAAGCTTGGTGGCTACTGTAACTGATGTGTTTGTAGCTGGATCAGAAACCACAAGCACTACCCTGAGATATGGACTTTTGCTCCTACTGAAACACACAGAGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001466:ENSRNOT00000001990:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]