MmuINT0045019 @ mm10
Intron Retention
Gene
ENSMUSG00000025479 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88607]
Coordinates
chr7:140773630-140774981:+
Coord C1 exon
chr7:140773630-140773771
Coord A exon
chr7:140773772-140774557
Coord C2 exon
chr7:140774558-140774981
Length
786 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AGCACTGTTGTCTCTTCTAGGAA
3' ss Score
11.22
Exon sequences
Seq C1 exon
GGTACAGTTGTAATTCCAACTCTGGACTCCCTTTTATTTGACAACTATGAGTTTCCAGATCCAGAGACATTTAAACCTGAGCATTTTCTGAATGAAAATGGGAAGTTCAAGTACAGTGACTATTTCAAGGCGTTTTCTGCAG
Seq A exon
GTAAGCAGAGTTCAGGAGTTATGTCTTCCCTGGGAAACTGTCTTGTTCAGCCCTAAACTTCCTCCCATGTGCTCTTCCCCCATCCTAGATGAGGACTACCATCTCGACTCCATTATGCCCCTGTAATATACAACCCAAGTACATTCGTCCCTGTTCAGAGAAGTCAATCGACAGATTTCACAAGGAGCCCAGGAAATCAGAGTTCTGGGTGGATTATCACAGAATGGACATGGTTTTCTAATTAATTGTTGAACTACTTCTACTCTAACCAGACTCCATAAAAAGCTCTCAGAACTGTATTACCTAATTCTTCATACGTTTCAACAAAAATTACTAAGCTCTATTCATTAGTTACCTGGGCTCCTCTTAGGAAGCATCCAAACCTCGCAGATGGTCCCATGGCAGGGCCTCACCTAGGGTTCCTGTAAAGGGAGACCCACAGCCAGTTCAATCATCTTAACAGTCCATGTTTTGCATAGGCTTCACTTGCCCCAGCTTCCTAGAGTTATGGACGATACAGTTTGGGTCCATTTCCCTAAACTACTACTTGTTTATGCAGTGGAGCTCTCAACGAGTGGGGTCAGTTGCTGGTTCAAGTCAGTGTCACTGACATTCATGAGCTCTGACATATGGGCATTGGTGTTCTGGGACTAAGGGCAAGGATGGAGAATCCTGGTTTCAGTGGTGTGCCTGAAGCCTCCTCCCACACCTCCAAGCCCTCAATGTTATGCGAGTTAGCTCTGCTCTGCTCCCTCAGCACCTCATCAGCACTGTTGTCTCTTCTAG
Seq C2 exon
GAAAGCGCGTGTGTGTTGGAGAAGGCCTGGCCCGCATGGAACTGTTTCTGCTTTTGTCTGCTATTCTGCAGCATTTTAATCTGAAGTCTCTGGTTGACCCTAAGGATATCGACCTCAGCCCTGTTACAATTGGCTTTGGCAGTATCCCACGCGAATTTAAACTCTGTGTCATTCCTCGTTCATGAGACCTGCTGCCCATCATTATCCCTTACAAAATGACTGTTTAAAAAAATGCCAAGCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTATCGAGATCTGACTCTGTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAGTCTTTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025479:ENSMUST00000026552:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAAGGCGTTTTCTGCAG
R:
GATGGTTGTGAGCCACCATGT
Band lengths:
358-1144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types