HsaINT0044301 @ hg38
Intron Retention
Gene
ENSG00000130649 | CYP2E1
Description
cytochrome P450 family 2 subfamily E member 1 [Source:HGNC Symbol;Acc:HGNC:2631]
Coordinates
chr10:133537751-133539122:+
Coord C1 exon
chr10:133537751-133537892
Coord A exon
chr10:133537893-133538779
Coord C2 exon
chr10:133538780-133539122
Length
887 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AATACCATTGTTACTTCTAGGAA
3' ss Score
7.35
Exon sequences
Seq C1 exon
GGCACAGTCGTAGTGCCAACTCTGGACTCTGTTTTGTATGACAACCAAGAATTTCCTGATCCAGAAAAGTTTAAGCCAGAACACTTCCTGAATGAAAATGGAAAGTTCAAGTACAGTGACTATTTCAAGCCATTTTCCACAG
Seq A exon
GTGAGAAAGATCAGAGGCAGTACCTTCCCTTGAGGAGCAGCCCACACTCCTCATCTCCCCTCCACATGTGCTCTGCCCTCGTCCCAGGCACCCACTGACACCCCAAACCTCACTGTGTGCCCTGTTTCTATTGACAACATGACCCAAATGTGCTCTTCCCTGTTCAGAGAAGTTACATAACATCTTTTAGCAGCAATCCTGGGAATGAAGTGTTGTTGTAGGTGGATTTTTTTTTTCCCAAAGACTAGACATTTTACATCATTCATTGCTAAATTTTGTTTCTATTTTAACAAGACTTAGTGAAAAGCTCTCAAAGCCATATTACCCAATTCTCCCTAATTTTAAACCAGAGCTACTAAACAAAACCTAACCTTTGGTTACCTAGAATCATCACAGGAAGCATCAAAGCCTTCCTGGGATGTGACTCAGTGATTTTCTTTGAGGCACTTGTCCTCCTTCCCAGGGCCTCATCTTAGGGATTGTTGTGGGAAGATCATACAACCAACTCCATACTTTTCACACCCAGTGCTGGAGCCCCAGCTTCTAACAGGGCACTATTTCCCTCCTGTAGGCATCACTGATGAGCACTGGGGGTGCCTTCTTTACTGGGCAGACACGGTCTTCCCAACTTAACACCGGTTTTTGCAGTTGAGCTCTGGATAATTGAGATTGTATGAAGACTGGTCCCCGAATTAGTCAGTGTTGCTGGTATCCTTCCACTCAAGTACATTTTGTGCTTCTTTTAATAGGCAGAGAAGGGTGAGTCCTGCCTTGTGATGGCCGTTTGCCCACAGCCTCCTCCTCCCCGCTTCCCCTAGTCTCACTGTTAACAGTGTCGTGTCTCTGAAACTCCCTCAGTGTCTCATCAATACCATTGTTACTTCTAG
Seq C2 exon
GAAAACGAGTGTGTGCTGGAGAAGGCCTGGCTCGCATGGAGTTGTTTCTTTTGTTGTGTGCCATTTTGCAGCATTTTAATTTGAAGCCTCTCGTTGACCCAAAGGATATCGACCTCAGCCCTATACATATTGGGTTTGGCTGTATCCCACCACGTTACAAACTCTGTGTCATTCCCCGCTCATGAGTGTGTGGAGGACACCCTGAACCCCCCGCTTTCAAACAAGTTTTCAAATTGTTTGAGGTCAGGATTTCTCAAACTGATTCCTTTCTTTGCATATGAGTATTTGAAAATAAATATTTTCCCAGAATATAAATAAATCATCACATGATTATTTTAACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130649:ENST00000463117:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAGTGCCAACTCTGGACT
R:
GGTTCAGGGTGTCCTCCACA
Band lengths:
343-1230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development