BtaINT0046196 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018365 | CYP2E1
Description
Bos taurus cytochrome P450, family 2, subfamily E, polypeptide 1 (CYP2E1), mRNA. [Source:RefSeq mRNA;Acc:NM_174530]
Coordinates
chr26:50550575-50551963:-
Coord C1 exon
chr26:50551822-50551963
Coord A exon
chr26:50551148-50551821
Coord C2 exon
chr26:50550575-50551147
Length
674 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AGTGTCCTTGTCACCTCCAGGAA
3' ss Score
9.72
Exon sequences
Seq C1 exon
GGCACAGTCGTAATTCCGACGCTGGACTCTGTCTTACACGATAGGCAAGAGTTTCCTGAACCAGAGAAGTTTAAACCAGAGCACTTTCTGAATGAAAATGGAAAGTTCAAGTACAGTGACCATTTTAAGGCGTTTTCTGCAG
Seq A exon
GTAAGAAGCATTCAGAGGCAGCACCTCCCGTGGGATTGTCCCTGAGTCCTACTCTCTGCTCCACATGTGATCTGCATCGTGCCCCTTACCCCAGCCTGACCCAAGCGTGTTCTTCCCTGTGCAGAGAGGTTAGATGACATCTTGTCACTGAAGTCCTGAGATTGAGTTGAGGATGAGTCATTTTTCTCCTTAGATACTTCATTTAATAGAACTTGGTGAACTCTTTCACAGCTATATTGCCTGCTTCTCAATAATTTTAAACAAGGATCACTGAGAAAAACCTAGTACTCGGTCACCTGGACCCGTCATAGGGCTGCCTTCCCTCCCCGGGAAGCCCTCCCCTTGGTGTGCTGTGAGGGAACGTCTGTGACCAACTTTGTAACTGTAACCCTCAGTGTGAGAGCACTGGCTTCCCCGTGGGCCCCCCTTCTTCCCCTAGGACGTCAGGCTGAGCACTGGCAGAGTCGATTCTCCCAACCTACCACAGGTTTATGCAGTTGAGAGCTGGTGGTTGGGGCCCTGATCCTCCTACACTGAAATCCACTCTGGGCCCCCATTCAGTGGGTAGATGGGGCCCAGTTCTGCTTCGGTGCCATGACACATGGCCTCCTCCCACCCCCTCTCCCCCTGCTACCTGGCCTGGAGCAGAGTCTTAGTGTCCTTGTCACCTCCAG
Seq C2 exon
GAAAGCGGGTGTGTGTTGGAGAAGGCCTGGCTCGCATGGAACTGTTCCTGCTCTTGGCCGCCATCCTGCAGCACTTTAACTTGAAGTCACTTGTTGACCCCAAGGATATCGACCTCAGCCCCATTGCAATTGGGTTTGGCAAGATCCCGCCCCGTTACAAACTCTGTCTCATTCCCCGCTCAAAAGTGTGAGGTGCAAACGCCCTGAAACCCCGAGCTCCCCTGCATCCCCTCTGCGAGGACTCTACAAGCCCAGGCTCCAGAGGGAACCACCTGTGCCAGAGACACTGCTTTCCAGGCCACGTTCCTCAGACAGAACTTGAAAGCAAAGTGCAAAAGGATTGTGTCAAACTAATTAAACTAATTAGCACAAACTATGACTTAGCTTGCGTTGGAGTTCCTAGAAATCATGGTAAGTAAGAACATATCAGTATAGTTTAAACTAAACTTCTGAGAAAAATAGAGCTACCCAGTCATCAGAGTCAGTATGTCTTATAAAGGAGTCACAAAGAGGAAAACAGATGCTATTTTGTTGTTCAGAAAAAATAAAATAATATAGCTTTGGCTATCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018365:ENSBTAT00000024437:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAGAGTTTCCTGAACCA
R:
GGCTTGTAGAGTCCTCGCAGA
Band lengths:
352-1026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]