HsaINT0044301 @ hg19
Intron Retention
Gene
ENSG00000130649 | CYP2E1
Description
cytochrome P450, family 2, subfamily E, polypeptide 1 [Source:HGNC Symbol;Acc:2631]
Coordinates
chr10:135351255-135352620:+
Coord C1 exon
chr10:135351255-135351396
Coord A exon
chr10:135351397-135352283
Coord C2 exon
chr10:135352284-135352620
Length
887 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AATACCATTGTTACTTCTAGGAA
3' ss Score
7.35
Exon sequences
Seq C1 exon
GGCACAGTCGTAGTGCCAACTCTGGACTCTGTTTTGTATGACAACCAAGAATTTCCTGATCCAGAAAAGTTTAAGCCAGAACACTTCCTGAATGAAAATGGAAAGTTTAAGTACAGTGACTATTTCAAGCCATTTTCCACAG
Seq A exon
GTGAGAAAGATCAGAGGCAGTACCTTCCCTTGAGGAGCAGCCCACACTCCTCATCTCCCCTCCACATGTGCTCTGCCCTCGTCCCAGGCACCCACTGACACCCCAAACCTCACTGTGTGCCCTGTTTCTATTGACAACATGACCCAAATGTGCTCTTCCCTGTTCAGAGAAGTTACATAACATCTTTTAGCAGCAATCCTGGGAATGAAGTGTTGTTGTAGGTGGATTTTTTTTTTCCCAAAGACTAGACATTTTACATCATTCATTGCTAAATTTTGTTTCTATTTTAACAAGACTTAGTGAAAAGCTCTCAAAGCCATATTACCCAATTCTCCCTAATTTTAAACCAGAGCTACTAAACAAAACCTAACCTTTGGTTACCTAGAATCATCACAGGAAGCATCAAAGCCTTCCTGGGATGTGACTCAGTGATTTTCTTTGAGGCACTTGTCCTCCTTCCCAGGGCCTCATCTTAGGGATTGTTGTGGGAAGATCATACAACCAACTCCATACTTTTCACACCCAGTGCTGGAGCCCCAGCTTCTAACAGGGCACTATTTCCCTCCTGTAGGCATCACTGATGAGCACTGGGGGTGCCTTCTTTACTGGGCAGACACGGTCTTCCCAACTTAACACCGGTTTTTGCAGTTGAGCTCTGGATAATTGAGATTGTATGAAGACTGGTCCCCGAATTAGTCAGTGTTGCTGGTATCCTTCCACTCAAGTACATTTTGTGCTTCTTTTAATAGGCAGAGAAGGGTGAGTCCTGCCTTGTGATGGCCGTTTGCCCACAGCCTCCTCCTCCCCGCTTCCCCTAGTCTCACTGTTAACAGTGTCGTGTCTCTGAAACTCCCTCAGTGTCTCATCAATACCATTGTTACTTCTAG
Seq C2 exon
GAAAACGAGTGTGTGCTGGAGAAGGCCTGGCTCGCATGGAGTTGTTTCTTTTGTTGTGTGCCATTTTGCAGCATTTTAATTTGAAGCCTCTCGTTGACCCAAAGGATATCGACCTCAGCCCTATACATATTGGGTTTGGCTGTATCCCACCACGTTACAAACTCTGTGTCATTCCCCGCTCATGAGTGTGTGGAGGACACCCTGAACCCCCCGCTTTCAAACAAGTTTTCAAATTGTTTGAGGTCAGGATTTCTCAAACTGATTCCTTTCTTTGCATATGAGTATTTGAAAATAAATATTTTCCCAGAATATAAATAAATCATCACATGATTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130649-CYP2E1:NM_000773:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAGTGCCAACTCTGGACT
R:
GGTTCAGGGTGTCCTCCACA
Band lengths:
343-1230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)