RnoINT0044368 @ rn6
Intron Retention
Gene
ENSRNOG00000012458 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:RGD Symbol;Acc:2475]
Coordinates
chr1:213520972-213522195:+
Coord C1 exon
chr1:213520972-213521113
Coord A exon
chr1:213521114-213521880
Coord C2 exon
chr1:213521881-213522195
Length
767 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AGCACTGTTGTCCCTTCTAGGAA
3' ss Score
10.46
Exon sequences
Seq C1 exon
GGTACAGTTGTGATTCCAACTCTGGACTCCCTCTTATATGACAGCCATGAGTTTCCAGATCCAGAGAAGTTTAAACCTGAGCATTTCCTGAATGAAAATGGGAAGTTCAAGTACAGTGACTATTTCAAGGCATTTTCTGCAG
Seq A exon
GTAAGCAGAGTCTGGGAGTCACACCTTCCCTGGGAAAGTGTCTTCAGTCCTAAACTTACTTCCCACGTGCTCTTCCCCATCCTAGATGAGGTCTACCATCCCAACTCCATCACTCCTTGTAATGTATAACCCAAGTACATTCCTCCCTGTTTAGAAAGTCAAATGGCACACATCTCACAAGGAATCTAGGAAATGAGAGTTCTGGGTAGATTATCACAGAATGGATGTGGTTTCCTAATTAATTTTTCAGCTATTTCTACTCTAACCAGATGCAGTAAAAAGCTCTCAAAACTGTATTACCTAATTCTTCATAAGTTTCAACAAAAATTGCTAAACTCTATTCTTTATCTACCTAGATTCTTCTTAGGAAGCATCCAGACCTCCTCAGATGGTCCCATCGCAGGGCCTCACCTAGGGTTCCTGTAAAGGGAGATACCATAGCCAGTTTGATAACTTTAATGGCCTGTTTACATAGGCTTCACCTGTACCATCTGGATGTTTTGGGTCTATTTCCCTAAACTACCACTTATTTATGCAGTGGAGTTCTCAATGAGTGGTGTCAGTAGCTGGTCCCTAAGTCAGTGCCACTGCCATTCTTGTTCTCTGACATATGATCACTGGTGTTCAGGGACCAATGGGCAGGGATGATGAATCCTACTTTAAGGTGGTGTGCCTGAAGCCTCCTCCCACACTCCAACACTTGATGTTATCAGTGCTAGCTTTGCAAGGGTCCCTCAGTACCTCATCAGCACTGTTGTCCCTTCTAG
Seq C2 exon
GAAAGCGTGTGTGTGTTGGAGAAGGCCTGGCCCGCATGGAATTGTTTCTGCTCCTGTCTGCTATTCTGCAGCATTTTAACCTGAAGTCTCTGGTTGACCCTAAGGATATCGACCTCAGTCCTGTCACAGTTGGCTTTGGCAGTATCCCACCCCAATTTAAACTCTGTGTCATTCCCCGTTCATGAGACCTGAAAACTTCCTGATATCCCTTCCATTGTTATCCCTTAAACTATGACTGTTTTTAAAAAACCCAAGCATATAGAGTTCCTATCATAAAATGAAACCGAAAAAATAAATAAAACCTTGATGAATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012458:ENSRNOT00000016883:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTCTGGACTCCCTCTTA
R:
ACAATGGAAGGGATATCAGGAAGT
Band lengths:
345-1112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]