MmuINT0045038 @ mm10
Intron Retention
Gene
ENSMUSG00000066097 | Cyp2j11
Description
cytochrome P450, family 2, subfamily j, polypeptide 11 [Source:MGI Symbol;Acc:MGI:2140224]
Coordinates
chr4:96339852-96345241:-
Coord C1 exon
chr4:96345079-96345241
Coord A exon
chr4:96340002-96345078
Coord C2 exon
chr4:96339852-96340001
Length
5077 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATCTCTCTTTTTTTCCCCAGGCA
3' ss Score
11.33
Exon sequences
Seq C1 exon
TTTGTGAAGAAGTATGGAAACGTAATTAGCGTGAATTTTGGTTACATTTCTTCAGTGATCATAAGTGGACTGCCCTTAATCAAAGAAGCTATCACTGGCATGGAACAAAACTTTTTGAAACGCCCCAGTTTAGCTGCAAGGCAACATGTATTTAAAAATAATG
Seq A exon
GTAAGTTTAATTGGCAGCAATATTGAATTCATTGGGTTTTTAAAAACAAGACCTGAATTCAGATGGAAAATGGGAAACTGTGGCAATGTTCCATTGACAGCTAGAGGGAATGAGTGGAAAAGGATATTAGCAAGATGCATTGCACTTTTTTGAAATTTTCAAAAGATAAAGGGATGCTGATAATATTGTTTCCAGTATAATAGAAGTTGTGTGGATCATATGATAAAGGTAGCTTTATGTCTGTAATTTTATAATATCCCTATTAATCAAGTCCTTCATGAAATGTTTCATTTTATTGTTTTACTTTCACCCTCCCATTTATCCCTCCTCTCTGTCTCCTCAGAAAAGCAAAGGCCTTCCATTAATATCAATCAGCATTTGTTTATCAAGTTACAGTAAGACTAGGCTTACCTTCTTTTACTGAAGCTAGGGAAAGCAGCCAAGTTACAGGAAAGGGATCCAATAACAGGCAGTATTATCTTTAAAGTCAGCTGGATACTAAATTTCTCAGATGAAAGCAGCCATCTGAGGATTGAGAACATCTCCCTCTAAGAGTGTCTTGGAGAAACCATGTCTAACTGCAGTCTAACTCAGAGACATGGGTAGGAAGTAACAACAACAACACCCAAAGCACAATACATGTGTCTCATTTCCATTTTTCTACTCCAACACTCTGCCTTAGCAAAACAGATATGAGGCACCTTCCTCCTGCTGAGGCTCTTCTTATTTATGACTCCATAAACTGCATCATTCAGGCCATGCCGCACAAGGATTTCTAACCTTCCAGATAGTGTTAGAATAGACTAGCATTTTCTGTATCCATTCTTCTGTTGAGGGATATCTGGGTTCTTTTCAGCTTCTGGATATTATAAATAAGGCTACTATGAACACAGTAGAGCATTTGTCCTTGCTATATGTTGGAGAATCTTTTAGGTATATGCCCATGAGTGGTATATCTGGGTCATCCACATAATCATTTCATTAGATGCTGAAAAATATAGAAAAACTCTTAGCCATACTAAGCAGAGAGCACAGAGATAGTATCCAAATTAATGAAATCAGAAATGAAAAGGGAGACATAACAACAGAACTGAAGAAATTTTTAAAAATCATCAGATTCTTTTCATTCTTAATCCTTCAGTAACAAACTTTCTTACAAATTCTTTGGCAGATATTTCCTATAATTTTTATTGTTTTATTTTTTCTTTTAACTTATGAAACACTGAAGTTCTTTAAGACTAACTATAAAACCTTCCCATTATGCTATATTTTGTTTCAGGAAATCTAATGAAGTCCAATAAGTTAAATAAGATCTTCTGATATTAATTGTAGTTTTTTCTAAGAACTTACATACACCTGAACAATGCATATGAAATAAACTTTGCCAGGAATGGGAATTTAGAATCAGCACATGTATGGCAGAAGTCACTATTATATTCCTGAAACTCTCAAACTGAAGTCAACACCAACAAGCACCTTGTTTCCTGCCCTTGTTTTTTTTCATTACTTACCCCTCTGACAGTTCTCTAAGAATCCCACTTTCCTGTCGTCTGAGTCATACATAATGATGACCTCTCTTGAATAATTTCAGTCCACGGGGTTTTAATGTCATCATCCGAGGCTAACTTACTATCATTTTTTGTCACTTTGAGTGTTCAAACTCCTTCTTTTGTAACTTACAAAGATAATATCTTCGCTACCATACCTGCATTTTCTGCCAGGTACCCTAAATGAGCCTCATAATGCGAAGTGTTCTTCTCTTCTATCCAACTCCACTCAAAAGCTTCTCTTTCTTTTTGATAAAAACTAGCAGCTGGACTCTTCTTGCCAATGTCAACAGTTTTGTATCCACTCAAATGTGGACTTCAGATACTATATGTCCCACAATGAGAATGATTTCTATCTATTCTTCTCACTATTAATCACTTATACCCAAGACCATTCTTCACATAGCAGATAATGTAGTCAGTCATGTACAATTAAGGGATGATTGATTCAAGGAGTAGTTAGGAAATTGCTGAAAGTAAAGCTTTTATGGTTTAATATGATTGAAGTCTGTTTCAACTTTTAAGCACATAATTTGATTTAATGATCTCTTTGTGTACTCATGCTAGCTTATTCTTTTTTAGGCATTTTTATTAGATATTTTCTTCATTTATATTTCAAATGCTATCCCCAAAGCCCCCTATACCCTCCCACCTCCCTGCTCCCCAACCCACCCACTCCAGCTTCCTGGCCCTGGCATTCCCCTGTACTGGGGCATATGATCTTCGCAATATCAAGGGCCTCTTCTCCCATTGACGTCTGACTAGGTCATCCTCTGCTACATATGCAACTAGAGACACAGTTCTTGGGGATACTAGTTAGTTCATATTGTTGTTCCTCCTATAGGATTGCGGACCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTAGGGGCCCTGGGTTCCATCCAATAGATGACTGTGAGCATCCACTTCGGTATTTTCCAGGCATTAGCATAGACTCACAAGAAAGAGCTGTCATGGTCCTGTCAGCAATATCTTTCTGGCGTATGCAATAATGTCTGGGTTTGGTGGTTGTATATGGGAAGGGTCCCTGGGTGGGGTAGTCTGGCGATTCCTCAGAAAACTGGACATATCGAAAAATTGGACTTCCAGAAGATCCAGCAATTCCTTTCCTGGGCATATACCCAGAAGATGTTCCAACTTGTAATAAGGATGCATGCTCCATGATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCTCTCAACAGAGGAATGGATACAGAAAATGTGGAACATTTACACACTGGAATACTACTCAGCATTAAGAACAATGAATTCATGAAATTCTTAGGCAAATGGATGCATCTGGAGGATATCATCCTGAGTGAGGTAACCTAGTCACAAAAGATCACAAATGAGATGCACTCACTGATAAGCAGATATTAGCCCAGAAACTTAGAATATCCAAGATACAACGTGCGAAACACCTGAAACTCAAGAAGAAAGAAGACAAAAGTGTGGGTGTGTTGGTCCTTCTTAGATGGGGGAACAAAATACTCACAGGAGCAATACAGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGACCATCCAGAACCTAACCCCACATGGGGATACATCCCATATACAGTCAACAAACCCAGACATTCTTGTGGATGCCGAGAAGTGCATGCTGATAGGAGCCTGATGTAACTGTCTGCTGAGAAGCCTGTCAAATACAGAGGCAGATGCTCACAGCCAGCCATTGCACTGAGCACAGGGTCCATAATGGAGGAGTTAGAGAAAGAACTGAAGAAGCTGAAGGGGTTTTCAACCTCATAGGAAGAGCAACAATATCAACTGATCAGACCCCCCCCAGAGCTCCGAGGGACTAAACCACCAACCAACGAGTACACATGGAGGGACCCATAGCTCCAGCCGCATATGTAACAGAGGATGGCCTTGTCAGGCATCAATGAGAGGAGAGGCACTTGGTCCTGTGAAGGCTCAATACCCCAGTGTACGGCAATGCAAGGGCAGGGATGTGGGAGTGGGTGAGTAATAGAGGGAACACCCTCAAAAAAGCAGGGGGTGAGGGGATGGGATAGGGTTTCAGGAAGGGGAAACTGGGAAAGAGGATAACATTTGAAATGTAAATAAAGAAAATATCCAATAAAATATGAGTTTAACTTTGATTTTTCTCAAAGAACCAGCTCCAGGTATTGTTGACTTTTTTTAGTATAATTCTCTTTGTTTCTAATTGGTTGATTTCTGCCCTAGTTTGATTATTTCCTGCAGTCTACCCTTCTTTTGTGTACTTGCTTCTTTTTGTTCTACAGCTTTCAAATGTGCTGTTAAGTTGCTAGTGTATGATTTCTCCAGTTTCTTTATGGAGGCACTCACAGCTATGAGTTTTCCTCTAAGCACTACTTTCATTGAGTTCCATAAATTTGGGTATGCTGTACCTTCATTTTCATTAAGTTCTAAAACATCTTTAATTTCTCCCTCTATTTATTCCCTGATGAAGTTATCACTGAGCAGAGACTTGTTCAGGTTCCATGTGTATGGGGGCTTTCTGGTGTTTTTGTTGCTATTGAAGGCCAATTTTAGTCTGTGGTGATCTAAAAGGGTGCTTGGGATTATATCAATTTTCTTGTATTGATTGAAACTTGTGATGGTTTGTATATCCTTGGAGCAGGGAGTGGCACCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTTTCACTGTGGGTGTGGGTATAAGATCCTCACCCTAGTTGCCTGGAAGTCAGGCTTCCACTAGCAGCCTTTGGATGAAGACATAGAACTCTCAGCTCCTCCTGCGTCATGGCTGCCTGAATACTGCCATGCTCCCACCTTGATGATAATGGACTTAACCTCTGAACCTGTAAGCCAGCCTCAATTAAATGTTGTTTTTTATAAGACTTGCCTTGGTCATGGTGTCTATTCACAGCAGTAAAACCCTAAGACACTTGTTTTGTGTCCAATTATATGGTCAGTTTTAGAGAGGGTACCATGAGGTTCTGAGAAGAAGGTATATTCTTTTGTTTTAGGGTGAAATATTCTGTAGTTATCTGTTAAATACATTTGGTCCATAATTTCTGTTAGTTTCACCATGTCTCTTTATAGTTTCTGTTTCTATGACCTGTCCATTGATGAGTATGTAGTGTACTTTCCCAGCTTTTTGATAACTTTTGGTTACAATGTATTATGATGCCTCAGTGTTTTACCAAGAGAAATGTGCATTTTCTTAATTGATAATAAATCTATAGAGTTCCTATCAGAACAAAATTATATAATTCATTAGAAGCTCTTACTGAGTTATGTTTTGTTGCAAGTCACCAGAACATATTATCCTCCTACATTGGGATTCTCTTTAGACAGCTGAATTTCCATATTTGCCCTTCATTTCTTCTGTACATGTGTCTAATACAGTTTCTTAAGTATTTTAAATCTATATTCAAAATATCATGATGCTGAATCTCTCTTTTTTTCCCCAG
Seq C2 exon
GCATTGTTTTTTCTAGTGGCCAGACATGGAAGGAGCAAAGAAAGTTCGCACTGACAATACTCAAGAATTTTGGATTAGGGAAGAAGAGCTTGGAGCAGTGTATACAAGAAGAGGCTTACCATCTTGTGAAGGCCATAGGAGAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066097:ENSMUST00000015368:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types