MmuINT0045265 @ mm9
Intron Retention
Gene
ENSMUSG00000066072 | Cyp4a10
Description
cytochrome P450, family 4, subfamily a, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88611]
Coordinates
chr4:115197907-115198293:+
Coord C1 exon
chr4:115197907-115198013
Coord A exon
chr4:115198014-115198102
Coord C2 exon
chr4:115198103-115198293
Length
89 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
ATGCCTTTTGCTCCCCTGAGATG
3' ss Score
-1.14
Exon sequences
Seq C1 exon
ATGGAGTGATCAAGCTGAGAAAGGATCAGCTGCAGGATGAGGGAGAGCTGGAAAAGATCAAGAAGAAGAGACGTTTGGATTTTCTGGATATCCTTTTATTTGCCAGA
Seq A exon
GTGAGTATGTTCAGCAAAGTCCTGAGAGTCTTCCTGGGAACACACAAGGGAACAAGCATAGCTCTGACAATGCCTTTTGCTCCCCTGAG
Seq C2 exon
ATGGAGAATGGGGACAGCATGTCTGACAAGGACCTACGTGCTGAGGTGGACACATTCATGTTCGAGGGCCATGACACCACAGCCAGTGGAGTCTCCTGGATCTTCTATGCTCTGGCCACACACCCTGATCACCAACAGAGATGCAGAGAGGAAGTTCAGAGCCTCCTGGGGGATGGATCCTCTATCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066072-Cyp4a10:NM_010011:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.5=100)
A:
NA
C2:
PF0006717=p450=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGAGGGAGAGCTGGAA
R:
AGATCCAGGAGACTCCACTGG
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: