MmuINT0045295 @ mm9
Intron Retention
Gene
ENSMUSG00000028715 | Cyp4a14
Description
cytochrome P450, family 4, subfamily a, polypeptide 14 [Source:MGI Symbol;Acc:MGI:1096550]
Coordinates
chr4:115165215-115166307:-
Coord C1 exon
chr4:115166180-115166307
Coord A exon
chr4:115165340-115166179
Coord C2 exon
chr4:115165215-115165339
Length
840 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
3' ss Seq
TTGTCTTGTTCTCACCACAGGAT
3' ss Score
9.82
Exon sequences
Seq C1 exon
GTTATGGTTTGCTCCTGTTGAATGGGAAGAAGTGGTTCCAGCATCGGCGGATGTTGACTCCAGCCTTCCACTATGATATCCTCAAACCCTATGTCAAAATCATGGCGGACTCTGTCAATATAATGCTA
Seq A exon
GTGAGTTGCTCTGTCCCTTTCTCATTTTATTACACCCACTCAACAGCATAGCCGCTATAACTCCACTCTTAAAAACATTGTAGAAATTCATATAGACTAATAACTCATGTATTGCTGTAAAGTGAGTCTCCCACAAATGCATAAATTGGATAGCTCCTGCTCAGCAGAATGGAGCCACAGACTTCAGATAGCACTGTGGTAAGTACAGGACCAAGGGTTTACCACAGTGGTCAAGACACCACACAGTATAAACTCCCTGGTTTGGGTGGGACTGGACAGTGGCAGCTTCAAGGTGTTATAAGACAAGAATGTCTTGGACTCCAGGTTTTCTGTGTGATCTTAAGTGACTCATGAGAAAGTGGACACCAGGTCTACATTCTCACACCCATACCTACCAAATCATTATCTCATATTAGGTCTTAGTTTCTGGCACAACCATATGAAAGATGAAGTGTAATTAAAGTAACCAATAGCAAGCTTGAGGCATGTTCACCCAGGTCCATAGCCTTTCTTTTCCTTTATACATTTTATACCATTCTATATTTGTATTTATATCCATCTTTTCAAGTCTAGTTTACTCTCAAAAAATCAAAGGGATCATATTTATAAACTGAAAGATTAAACTTGTTTCTAAAACCAAATAAGCAATAATTGCACACAATTAGAAAATGATGTTTTGTTAAAGAGTTTGGAAGAAGCAGACATCAGATTACAAACATTTTCTTTGTGCTTTTAATTTGCTGGAAGCAAATGAACTTAATGGAGAGGGACTCCAGAATGATTATCTACAGATAAAGAGAAAAGTATTAGTCTAAACACATTGTCTTGTTCTCACCACAG
Seq C2 exon
GATAAATGGGAGAAGCTTGATGGCCAGGACCACCCTCTGGAGATCTTCCACTGTGTTTCATTGATGACACTGGACACTGTTATGAAGTGTGCTTTCAGCTACCAAGGCAGTGTTCAGTTGGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028715-Cyp4a14:NM_007822:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.3=100),PF0075813=EPO_TPO=PU(20.9=41.9)
A:
NA
C2:
PF0006717=p450=FE(9.1=100),PF0075813=EPO_TPO=FE(47.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGCTCCTGTTGAATGGG
R:
TCCAACTGAACACTGCCTTGG
Band lengths:
246-1086
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: