MmuINT0045332 @ mm9
Intron Retention
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115243368-115243753:+
Coord C1 exon
chr4:115243368-115243474
Coord A exon
chr4:115243475-115243562
Coord C2 exon
chr4:115243563-115243753
Length
88 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
GTGCCTGTTGCTTCCCTGAGATG
3' ss Score
-1.54
Exon sequences
Seq C1 exon
ATGGAGTGATCAAGATGAGAAAGGATCAGCTGCAGGATGAGGGAGAGCTGGAAAATATCAAGAAGAAGAGACGTTTGGATTTTCTGGATATCCTCTTATTTGCCAGA
Seq A exon
GTGAGTATGTTCAGCAAAGTCCTGAGAGTCTTCCTGGGAACACACAAGGAACAAGCATAGCTCTGACAGTGCCTGTTGCTTCCCTGAG
Seq C2 exon
ATGGAGAATGAGGACAGCATGTCTGACAAGGACCTTCGTGCTGAGGTGGACACATTCATGATCGAGGGCCATGACACCACAGCCAGTGGAGTCTCCTGGATCTTCTATGCTCTGGCCACACACCCTGAGCACCAACAGAGATGCAGAGAGGAAGTTCAGAGTCTACTGGGGGATGGATCCTCTATCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712-Cyp4a31:NM_201640:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
NA
C2:
PF0006717=p450=PD(14.5=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGAGGGAGAGCTGGAA
R:
AGATCCAGGAGACTCCACTGG
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: