MmuINT0045342 @ mm9
Intron Retention
Gene
ENSMUSG00000063929 | Cyp4a32
Description
cytochrome P450, family 4, subfamily a, polypeptide 32 [Source:MGI Symbol;Acc:MGI:3717148]
Coordinates
chr4:115282232-115283212:+
Coord C1 exon
chr4:115282232-115282356
Coord A exon
chr4:115282357-115283057
Coord C2 exon
chr4:115283058-115283212
Length
701 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ATGTTCTTTATCTTCTTCAGAAA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GACAAATGGGAAAGGCTGGCTGGTCAGGACTCCTCAATAGAGATTTTTCAACACATCTCCTTAATGACCCTAGACACTGTCATGAAGTGTGCCTTCAGCCACAAGGGCAGTGTTCAGGTGGATGG
Seq A exon
GTGAGTGACAAGCCTTGAACTTCATGGCCTTTGTCTTACCAACTGATATGGACTTCTCTGTAATGCATGTGGGACATCTAGGATACTCAATAAAGAGTATTACCCCAAGCTCCATTCAATCTCTAACAAAATCCAATCTTAACTCAACCATAGATAGCTGATCCCTAGCTGGGGTGGATGCCTAGACACTCAAGCCACCTTTTACTGACTTGAAAATTACAAGGTTGGACACGCAAACTTTATATGCCCCAGAACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGCGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGAAAAAAAAAAAGAAAGAAAATTACAAGGACCGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGACAAAACGTGGGAGTGGGTGGGTAGGGGAGTGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATTAAAAAATGCATTCTAAAAAAAAAAAGAAAGAAAATTACAAGGGTTATAAGACACAGTGTGCTCCTCAATGTTGTCTGTTCCTAACATATTGATATCTCTCAGAGTCAATTCTATCTGTGCGCCATTCTCTCTACAGTTTAATATGTTCTTTATCTTCTTCAG
Seq C2 exon
AAATTACAAGACCTACCTCCAGGCCATTGGGGACTTGAATAACCTATTTCACTCCCGTGTGAGAAATATCTTTCATCAGAATGATACCATCTACAGACTTTCTTCCAATGGCCGCTTGGCCAAACAAGCTTGTCAACTTGCCCATGATCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063929-Cyp4a32:NM_001100181:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAATGGGAAAGGCTGGCT
R:
TGTGTGATCATGGGCAAGTTGA
Band lengths:
279-980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: