MmuINT0045420 @ mm9
Intron Retention
Gene
ENSMUSG00000003484 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:MGI Symbol;Acc:MGI:1919304]
Coordinates
chr8:74512381-74513041:-
Coord C1 exon
chr8:74512959-74513041
Coord A exon
chr8:74512637-74512958
Coord C2 exon
chr8:74512381-74512636
Length
322 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCACCCCGCCCTCCTGCAGGAA
3' ss Score
10.51
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTTGATGCCGACAACGTCAAGGGCAGGTCACCCCTGGCTTTTATTCCCTTCTCGGCTGGGCCCAG
Seq A exon
GTGAGGCTAGGACTGAGGGGCAGGGGCCTCGGGCTGACTGTGAGGACGGGGGAGTTGGGGTTTTTTGGAGGTTAGCGTTTCCTCCCTACCTCCCTGCACAGAATTGTGCAAAGGTTTGGGAACCAGGGAGGGGAAGGTGAAGAGTCCTCTGTGCTCAGAATCCCGCCCTGGCCTTTTCGGCTATTGATCAAGGCTTGGCTCTGAGGATGTCTACGTCCTTGCGTGGTCCCAGAAACCTCAGACTCGGGCCAGGTTCTAGTGCTGTGTTGGTCCTGGGTAGGGTCTTGGGCACAGTCAGAGTTCCCACCCCGCCCTCCTGCAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCCATGAGCGAGATGAAAGTAGCTCTGGCGCTGACTCTGCTGCGCTTCCGCGTTCTGCCGGATGACAAGGAGCCCCGCAGGAAGCCGGAGCTGATCCTGCGCGCAGAAGGCGGGCTGTGGCTGAAAGTGGAGCCGCTCAGCGCAGGCGCGCAGTGATCTCTGAGCTGGCGTGGGACTCTCCTATCCATCCACCCACCTGTGCCTTTCCAGGAATAAAATTTTCTTGTCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003484-Cyp4f18:NM_024444:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.8=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATGACCCCTTCCGCTTTG
R:
GGTGACAAGAAAATTTTATTCCTGGA
Band lengths:
336-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: