MmuINT0045420 @ mm10
Intron Retention
Gene
ENSMUSG00000003484 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:MGI Symbol;Acc:MGI:1919304]
Coordinates
chr8:71988482-71989142:-
Coord C1 exon
chr8:71989060-71989142
Coord A exon
chr8:71988738-71989059
Coord C2 exon
chr8:71988482-71988737
Length
322 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCACCCCGCCCTCCTGCAGGAA
3' ss Score
10.51
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTTGATGCCGACAACGTCAAGGGCAGGTCACCCCTGGCTTTTATTCCCTTCTCGGCTGGGCCCAG
Seq A exon
GTGAGGCTAGGACTGAGGGGCAGGGGCCTCGGGCTGACTGTGAGGACGGGGGAGTTGGGGTTTTTTGGAGGTTAGCGTTTCCTCCCTACCTCCCTGCACAGAATTGTGCAAAGGTTTGGGAACCAGGGAGGGGAAGGTGAAGAGTCCTCTGTGCTCAGAATCCCGCCCTGGCCTTTTCGGCTATTGATCAAGGCTTGGCTCTGAGGATGTCTACGTCCTTGCGTGGTCCCAGAAACCTCAGACTCGGGCCAGGTTCTAGTGCTGTGTTGGTCCTGGGTAGGGTCTTGGGCACAGTCAGAGTTCCCACCCCGCCCTCCTGCAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCCATGAGCGAGATGAAAGTAGCTCTGGCGCTGACTCTGCTGCGCTTCCGCGTTCTGCCGGATGACAAGGAGCCCCGCAGGAAGCCGGAGCTGATCCTGCGCGCAGAAGGCGGGCTGTGGCTGAAAGTGGAGCCGCTCAGCGCAGGCGCGCAGTGATCTCTGAGCTGGCGTGGGACTCTCCTATCCATCCACCCACCTGTGCCTTTCCAGGAATAAAATTTTCTTGTCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003484:ENSMUST00000003574:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(16.2=100)
A:
NA
C2:
PF0006717=p450=PD(10.8=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATGACCCCTTCCGCTTTG
R:
GGTGACAAGAAAATTTTATTCCTGGA
Band lengths:
336-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types