RnoINT0044568 @ rn6
Intron Retention
Gene
ENSRNOG00000015751 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:RGD Symbol;Acc:1305261]
Coordinates
chr16:19527207-19528934:+
Coord C1 exon
chr16:19527207-19527289
Coord A exon
chr16:19527290-19527607
Coord C2 exon
chr16:19527608-19528934
Length
318 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCACCCCGCCCTCCTGCAGGAA
3' ss Score
10.38
Exon sequences
Seq C1 exon
GTGTATAACCCCTTCCGCTTTGATGCAGACAACGGCGAGGGCAGGTCACCCCTGGCTTTTATTCCTTTTTCGGCTGGGCCCAG
Seq A exon
GTGAGGCCAGGAATGAGGGGGAGGGGTCTAGGGTTGACATGAGGACAGGGGGAGTTGGGGTATTTGGAGGTTAGTGGCTCCTCCCTGCCTCCCTGCACAGGAATTGTGCAAAGGTTTGGGGAATTGGGAAGGTGAAAAATCCTTCTCTGTGTTAAGGCCAGCCCTGGCCTGTTCGGTTATTAAACTGGGGTATTATCTGAGGATATCGATGCCCGTTCGTGATCCCAGATACCTCAGCCTCGGGCCAGGTTCTAGTGCAGTGTTGGTCCTGGGTAGGATGTAGGGCACAGTCAGAGTCTCCACCCCGCCCTCCTGCAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCCATGAGTGAGATGAAAGTGGCTTTGGCGCTGACTCTGCTACGCTTCCGTGTCCTGCCTGATGACAAGGAACCACGCAGGAAGCCAGAGCTGATCCTGCGTGCAGAGGGTGGGCTGTGGCTGCGGGTGGAGCCTCTCAGCGCAGGAGCGCATTGACCCCACAGCTGGCCTGGAAACTGCCCCATTCACCCACCCGGCCTGCGCTTTTCCAGGAATAAAAATCTCTTGTGTGAGCTTCACCAAACATCCAGGTTACACGCCTCATGTGAGCCACAGGGAGCTGTGGAAGGTGTTTGAGCGGTAGAAGGATTTAAGGAACATGAAAATTAATATTGTCACCCGGGAGGCAAGGCACACCCGTGAGGGATTATCTGAATAAATTAACTGAAGTGGAATGATCCGTCCTAATCCTAACTGTAGGTGGAATTCTGGGTTGAATTTCAAAAAAGTGTGGCCTAGATTAGAGATGGCTCTTCTCAGCTCAGATGATCTAATCAAGAAAATTTTCTTAGCGGTATGTCAAACAGCTTGGGTTTTAGTTAATTACAGATGTAGTCAAATTGAAAACCAAGAATGGCCACCACAGCCAGACTACCTAACCCTTCCCAAACGTTTCCAACACATGAGCCTATGTGGTCATCCTCACCCAAATCACCACAGGCTTACTTTTGAGGATGTGCCATTACAGCAACTGGGCATGCGTGTTAGTCAGGGCTCTCTAGACTTACAGAACCTACGGAATGTCTCTATATATTAAGGGGATTTATTGGAATGACTTACAGTCTGTAGTCCTAAGGCCAAGTCTTTTAAGTTCAGACTCCATTTTAGAGAACCTGACCTAAGTCTGAACTCAGGTAAACTAACAGGCCGGTACCCAGCATTAGTTTCCAAGTCGCCCCCCCCCCCCCAACAAAAACAAAACCTAGCTCCAGCCTCTAGGCTAATCCCCACTAAGACCAGCATTTTCAGGTTACACCCTCAACAAGACCAGCGTCTCCAAGTTCTTCCCCCAACAAACTTACACCCACAGGTTACAAGCCCACCCCCTGGGTAATGACCACCGGTGCAGAAGGCAGCAGAAATTAGGTTTTTCCCAATACCAGACAATTATGTCAAAGGCCGCAGTAGCTTTCCAATTAGATGTTTGCACACTCACCACTCCCCTCGCTTACTACAAGTTACTACAAAGCCTTGCCCTATAGATATTCAGCCCCTCCACCCCCATCGAAACTGTCCTGCGTGACAGCGGTGCATTGGAGGGGCCCGAGCTAGCTCCAATGAAATAAAGACCCTGCTGTGTGTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015751:ENSRNOT00000021609:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCTTTTTCGGCTGGGCC
R:
GCTCAAACACCTTCCACAGCT
Band lengths:
345-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]