MmuINT0045427 @ mm10
Intron Retention
Gene
ENSMUSG00000003484 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:MGI Symbol;Acc:MGI:1919304]
Coordinates
chr8:71992832-71993231:-
Coord C1 exon
chr8:71993165-71993231
Coord A exon
chr8:71992962-71993164
Coord C2 exon
chr8:71992832-71992961
Length
203 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GGAGCCCGTCTGCCTTTCAGGCC
3' ss Score
6.12
Exon sequences
Seq C1 exon
GATGAACATGGAAAGGCTCTGTCTGATGAGGACATCCGAGCGGAGGCTGACACCTTCATGTTTGGAG
Seq A exon
GTAAGTGAGTGTTCCTGTGAACTGTGACAGAGAGGGCAGATGTCTAGGCATCCTGGCCACAAGGTTGAAGACCCGGGATCCTTCTATTTCTTCCCTTCTGTGTCCTTCCTGGTGGGGTGGGAGTGGGGTGAGTCACCTCAGTGCTGTCCATTTGTTGGTGCTGAAGCAGCCTAGAGACCCCAGGGAGCCCGTCTGCCTTTCAG
Seq C2 exon
GCCATGACACCACGGCCAGTGGACTTTCCTGGATCCTGTACAACCTGGCAAGACACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCGGGAGCTCCTGAGGGACCGCGAGCCTGAGGAGATTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003484:ENSMUST00000003574:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
NA
C2:
PF0006717=p450=PU(16.2=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACATGGAAAGGCTCTGTCT
R:
ATTCAATCTCCTCAGGCTCGC
Band lengths:
196-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types