RnoINT0044575 @ rn6
Intron Retention
Gene
ENSRNOG00000015751 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:RGD Symbol;Acc:1305261]
Coordinates
chr16:19515077-19515447:+
Coord C1 exon
chr16:19515077-19515143
Coord A exon
chr16:19515144-19515317
Coord C2 exon
chr16:19515318-19515447
Length
174 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGCCCAGAGACCCCTTTCAGGCC
3' ss Score
-1.73
Exon sequences
Seq C1 exon
GATGAACATGGCGAGGCTCTGTCCGATGAGGACATCCGAGCAGAGGCTGACACCTTCATGTTTGGAG
Seq A exon
GTGAGTGAGTGTTTCTGTGAACTGTTACAGAGAGAGTGGAAGTCTAGGCATCCTGGCCACAAGGTTGTGGACCCTGGATTTCTTCCCCTTCTGTGTGTTTCCCGGCGGGTTGGGGCGAGCCACCTTAGTGCTGTCCACTTGGTGGTGCTGAAGCAGCCCAGAGACCCCTTTCAG
Seq C2 exon
GCCACGACACCACGGCCAGTGGGCTCTCCTGGATCCTGTACAACCTGGCGAAGCACCCGGAATACCAGGAGCGCTGCCGGCAGGAGGTGCGGGAGCTCCTGAGGGACCGTGAGCCTGAGGAGATTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015751:ENSRNOT00000021609:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
NA
C2:
PF0006717=p450=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACATGGCGAGGCTCTG
R:
TCAATCTCCTCAGGCTCACGG
Band lengths:
194-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]