Special

MmuINT0049600 @ mm9

Intron Retention

Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:99981582-99984737:+
Coord C1 exon
chr15:99981582-99981794
Coord A exon
chr15:99981795-99984587
Coord C2 exon
chr15:99984588-99984737
Length
2793 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGA
5' ss Score
7
3' ss Seq
CTTGTCTTTTCCTCTCCTAGAAA
3' ss Score
10.23
Exon sequences
Seq C1 exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATTCAGGGATCGTCCACTTCTTCATCTGCATCTTCCACGCTGTCCCATGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTGTTTGCCAATACTCGAATAG
Seq A exon
GTAGGAGTTGGATCTACCCAAGAAACCCACCCAATGTTCCACTTGGCAACCAGTATCCAGGAAACAGTTTTTGATTGTGTTAAGTTTTCGAAGGCTTAGAAAGTTTGATCACAGAGAACAGTTAATGAGGTAGAGAGGGAAAGGCCACAGTGTGTTCATTGCAGGGTGATGGGTGTCATCGCCAGGATTGTACAGAACATCCCTCACCTGAAGCCATATCTATTTCTATAAGCAATACTGAAGCTGCGAAATAGAACACCAGTCTGAGTATGGGTTTATCCAAAAAAAAAAAAAAAAAAAAGTCCCTATGTCAGAGCTTCTAAGCATTTAGCAGCTCAGATTTCCCAGGGATACTGTCTGCATTTCATACAGCATGCATAGCTAACTGGTGCAGATTCCACACCAAGCCATTGTCAGCAAGACCTTTTGTCCTTAGCCTAAAGACTGGATTTATGTCGCTTGCTGCTGTGGCATTGCTGCATGAGCAGTGTGCAGATCAGTTGGCATGCTGAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGTGTGGAGTGCTGTGGCTTGCCTCTGCTTTATGCACTTGTGAATTTTGGTGTTGTTTCCCAAGGTCTCTGCTTCCCTTCCTCAAGAAGTGCCCTGTCCCACCCTTGTGCTGTGTCTGTTGTCTTACCTGTTTCCTTGACAACCAGTCACATTTCGTTGTCTTAGTTGGCATCTCAGCAACCTTCCTTATCACATTTATATAACATTTCAATTTGATTTCTGAAAAGGCTGGAAAATTTTAATTTAACATTATAGTTTTTAATGAAGATACCTACCTACCTTGTTAGTATAATTACCACATAAAAGCTACCTGCCATCCATGGTAGCCCCCTCAACCCTGTATCACACCTCTCATGGCCACCATATGCAGACAGCAATGTTCTCCACCACACCATCACAGACAACAAACCTCTGAGATGTGAGAGTTTACATAGAATATGTCTTAAAGAGCGTTTCCCTTGCAAAGGGGAATCTAGACACCTACTTCACCTGACTGGGTTTTGTTAAAACAGTTCCACATCCTCCTTGTGCTTCTGTTAATTTTTAAAACTGAGTTACAGAAACTATCACATGCAGTGTTGCTACTTTTGGATGTTAGTGATTACTGACGTAATTCCTGTTCCTTAAAGAGACTGTAGTCTCTTAAGAGCATGGTGGCGCACACCCTTGACATCAGCACTCAGGAGACATCATGAACATGGTACATGTTTATAATTATATTGTTCTTGTTGTGATTTTAAAGCATAGCACTGTTTGTCTGTGCCTTAGCTCACTTAGCCTCTTACAGAGACTGCCCAGATGAACTTGCTGGATCAAAGACAATAAGCATTTCTAATTGGGTCAATCCAGCACTTGGAAGGTGGGGCAGGATTGAGGCTAACCTGGGCTACATAGCAGGATCACTTCTTGAGAAACAGACAAAACGAAGCACAGAGCTGGGTGTGCTGGCACACACATGTAATCCCAGCACTCACAAGGCTGAGCTAGAAGACTCACAAATTCAAAGTCTCTTGAGGTACAAGAGACAAAAAGAAAACACTGATGCCTTCTCAGCCACGCTAACCACAATGGACTCAAGTCAGTGTGTTTCAGATTTTAAAAAGTATTAAATTATAAAGTATTAAATTTATAAGACTCATAATCACAGGGCTTTGAAGCACAGAAATCTTACTCTTAAAGCAATCTTACAATCTTTCCCTCCTCTTACTTTTAGTGGTTTTATTATTTTTACATTGTACAGTTTACTTCCTCTAATTTTCTTCTTCTTCAGAAGAATTTTCGTAGCCCTGTTGAGTAGTTCTCCTTTTACATCACTCACTCTCTGACAGCAGCTTACTTCCCGTGTTATGACTGGCCCCCTGACAGGGCATGCAGGATACCCACACCTGTAATCCCAGCAGGAGGAGCAGCTGACCCAACTGATGAGACCCTGTCTCAAAAAAATAAAACTCTAAAGAATTTTTCCAGGAAGTAGCATATGTGTGTTAATCTCTGCCGAGATCAAGAAGGAGCCTTGCCTGGTGGTGGGTCCAGCCTCACTGTGGGCTGTTTTATCAGAACTAGAAGTTGACTTCACCTCATTTCCCATCATCTGAGAGCCTGGGTCATCTGGCCCACTGTGAGCCATGGTAGGCAAAACACAACATGAGGAAGTGTCCTAGGCTGGAGAACTGGTGGCAAACTGGCCATTTACTCACTGTCAACATTCTAGGTTGCTTTACAACATTGAATTTCTACTTATGCATTCTATAAGAAAATAACATTTTTGAGAAACATGCTAGGTGATTTGATGTAATAACTAAGGTTACTCAGTTCTTGAAAATTATAGTTTTGGAAAGCCGATATGAACTGGTTTACCTTAGACTTTGATTATACAGTCTGTTTTAGGGCCAGGGGGTGGCTCAGCAGGTAAAGGCACTCGCCCTAGGACCCCAGCCGGTCCTTGGAATCACCAGCTCCCAGACACTGTACTCTGATCTCCAGTCGTGCACTCTGTAAACACGTATACACTCACACACACACACACACACACACACACACACACACACGTGTCCACATACATACATGCACACACACATGCATTACATACATATACTATACACATTCTTATAATGATGAATAAAATCTTTTTTTAAAGCCTGTTTTAAAAGAGCGAGTGCTTTTCATTCCTTCAAAAGCAATGGGTGTAGAAGTGGTTCCCTTTACTGTCAGTACCGTATGATTTTAACTCTTGTCTTTTCCTCTCCTAG
Seq C2 exon
AAAATGTCTCTGCTCCTCCCGACGTCACTGCAACTACCTCTTCCTCCTCTTCCTCACTTCGCCCTGCAAACATTGACCTGCCCCCCTCTGGCATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-Dip2b:NM_001159361:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.944 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000097777f1397A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000097777
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr12:51065182-51068256 
ALTERNATIVE
HsaINT0048144
(DIP2B)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:29413382-29415988 
LOW PSI
BtaINT0049334
(DIP2B)
Chicken
(galGal4)
chrLGE22C19W28_E50C23:175776-178041 
ALTERNATIVE
GgaINT1011328
(DIP2B)
Chicken
(galGal3)
chrE22C19W28_E50C23:150793-153058 
LOW PSI
GgaINT0001058
(DIP2B)
Zebrafish
(danRer10)
chr23:27462325-27462587 
ALTERNATIVE
DreINT0057220
(dip2ba)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"