DreINT0057220 @ danRer10
Intron Retention
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27462175-27462830:-
Coord C1 exon
chr23:27462588-27462830
Coord A exon
chr23:27462325-27462587
Coord C2 exon
chr23:27462175-27462324
Length
263 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTG
5' ss Score
5.9
3' ss Seq
GTTATGTGTCTCCTTTACAGATA
3' ss Score
10.51
Exon sequences
Seq C1 exon
ATACATCGTCAGCGTCGGAGGATGAGGGCTCCCTGCGCCGGCGTCAAGCCGCAATCAGTGCAATGCTGGCTCAGAACCTCCAGAGTCCCGAATACTGGATCAACCGATCAGTCCAGGGCTCCTCCACATCCTCCTCCGCCTCCTCCACGCTTTCTCACGGAGATGGCAAAACGCACAACCACAACAACCACAGCCAGGGGCAGACCAGTGCGCTCGCAGATGTGCTGGCACACACCCGCATAG
Seq A exon
GTACTGCAGGATCATGAGTCACACAAACACACGTGTTCAAGTGCTGAATCACAGACGACACAAAGAAGAGCTTCAGTTTTTATATGTCTGGTACTTACGTAAGCTTGATTTACTTCCCAGTGATCAGGGCAAAGGAAAACAGCAGCAGATCTTAATTTCCAAGTTCGTCAGCTTTAACGGTGGCTATGCAAACCTGTTTGTTCAGTTGTGTGTCATATTGAATGCTGGATGAATCACTATGCTGTTATGTGTCTCCTTTACAG
Seq C2 exon
ATACCAACAGCAGTAGTGGCAGTGTCCCGCCTGACGTCACGTCCACAGCGCCCCAGGACAGGAACTCCAGAGTAGACCTGCCAGCCAACATCGCAGTGAAGGGCATAAGCCGAGGCCAGAGCCGATCCAGTATGATGGACACTGCCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350:ENSDART00000019521:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGTGCAATGCTGGCTCA
R:
GCTTATGCCCTTCACTGCGAT
Band lengths:
301-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]