RnoINT0047763 @ rn6
Intron Retention
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141819239-141822034:+
Coord C1 exon
chr7:141819239-141819451
Coord A exon
chr7:141819452-141821884
Coord C2 exon
chr7:141821885-141822034
Length
2433 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGA
5' ss Score
7
3' ss Seq
CTCGTCTTTTCCTCTCTTAGAGA
3' ss Score
9.52
Exon sequences
Seq C1 exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATCCAGGGATCGTCCACTTCTTCATCTGCGTCTTCCACGCTGTCCCACGGAGAGGTCAAAGGAACCAGTGGGTCCCTAGCTGATGTATTTGCCAATACTCGAATAG
Seq A exon
GTAGGATTGGATCTACCCAAGAAACCCACTAATTGTTCTAGTTGGCACCCAGTGTCCAGGAAACAGTCCACGGCTGTGTTAAGTTTTGATGGCAGAGAAAGTTAGCTAGGTAGAGAGGGAAATGCCAGGGGTGTATTCAGTGCAGGGTGATAGGCATCGTCAGCAACGTCGGACAGAGCGTGCTCACCCGAAGCCGTGCCTGTTTGCATAGGCAGCACTGAATGCGAGAGTGTTGACACTGGTCTGGACAGGTCTATCTGAAAGGAAAGACTGCAGAGCTGCTAGGGCTCAGAGACCCAGGAAGACTGTCCGTGTCCACAAAGCATGCATATGTAACCTGTGAAAATGCACACTAAGCCATGTCATGAAGACCTTCTGTCCTTAGCCTGACTGGATTTACGTCACTTGCTGCTGTGGTGTTGCTGCATGCGCCGTGTGCAGGTCGGCAGGCGCTGAGCTGCTGGCTGCTGCCGTGTGGAGAGCTGCTGCTCGCCTCTGCTTTGTGCACTTGTGAATTTTGGCTTTGTTTTCCAAAGTTGCTGCTTTCCTTCCTCGGTGGCACCAAGTGCCTTGTCCCTTGGTGGCACCGAGTGCCCTGCCTAGCCTTTGTGCTGTGTCTGTTGTCTCCCCCTGTTTCCTTGACAACCAGTCACATTCTGTTGTCTTAATTGGCATCTCAGCAACCTTTCTTATCACTTTATAGAACATTTCAATTTGGTTTCTGAAAAGGCTGGGAAATTATAATTTAAGGTTATAGTTTTTAATGAAGATACCTGCCTTGCTACTACAGTTACCAGATAAAGAGCTTCCCGCCATCCATGGTGACCCCTGCCACGTTCTCTACCACACTGTCACAGACAGCAAGCTGCCGAGATGTGGCCTGAAGAGTTTACGTAGAATATGTCTAATATGTCTAAGGAGCTTTTCCGCCTGCAAAGGCTTAAACCCGTGTTGCTGCTTTTGGATGCTGGCCCTTGCTAATGTAACGCCTGTCCCTTCAAGCGACTACAGTCTCTGGGGCATGGTGGTACACGCCCTTAACCCAGTGCTCAGGAGACATCATGAGCACCTTACATGTTTGCAGTGACACTGTTCCTTTTGTGATTTTAAAGTGAACCACTGTTTTCTGTGCCTCAGCTCACTTAGCCACACCATTAGTCTGGACAATGAAATAGTGTCTGCTGCTGTGCTCTTTAAAACATTGCCCGGGTGAGCCTGCTAGGTCAGAGACCATACACATCTCTAATTGGATATAACCAGATGAGCCTGCTAGGTCAGAGACAATACACATCTCTAATCGGATATAATCAGCACTTGGAAGCTGAGGCAGGATTGAGGCTAACCTGAGCTACATAGCAGGCTCACTTCTTGAAAAACAAACAAAAGGAAGCAGAGAGCTGAGTGTGCTGGCACACAGCTGTAATCCCAGCACTCACGAGGCTGAGATGGAAGGCTCACAAATTCAAAGTCTCTTGAGGTACAAGAGACAAGAAGAAAACATTTGATTTCTTCTTAGCCATGCTATACCACAATGGACTCATGCCAGTGTGTTTCAAACTTTAAAAATATTACATTTATAAAACTCATAATCACAGGGCTTTGAAGCACAGAAATCTTACTCTTAAACAGTCCCACAATTGTATTTCCCTCTTCATGCCTTTAGTGGTTTTATTCTTTTTACATTGTATACCTTACTTCCTCTAATTTTCTTCCTCTTCAGAAGATTTTTTTCATGCCGTAGCTCTGTTCAGTAGTTCTCTTTTTACATCATTCAGTTTCTGACAGCAGCTTACGTCCTGTGTTTCGAATCTCTCCCAGACCGGGGTGAGCAGGATGCTGCCCTCACACCTGTAATCCCAGTTGATGAGATCCTGTCTCACAGTGAAACTCAAAAGGACTTCTCCATGAAGTAGCACATGCGTGTTAATCTCAACTTAGAGCAAGAAAGAGCCTCACTGTGGGCTGTAAGAAAATAACATTTTTGAGAAACATTTGCTAGGTGATTTGATGTAATAACTAAGGTTACTCAAATCTTGAAATTAGAGTTTTGGAAAGCTGATATGACCTGGTTTACCTTAGACTTTGATTATAGAGTCTGTTTTGGGGCCAGGGGTTGTTCTCTGATCTCCAGTTGTATATTCTGTACATGTATGTATACCTATACACACACATTGGTATATATAAACACATGCACATGCATTCACACACATGCATATACATGTACACACATACACAGGCACACACATGTACATATACACATACATTACATATATATATATATACTATACATATTCTTATAATGATAAAATCTTTCTTTGAAGTTTGTTTTAAAAGAGTGGGTGCTTTTTTATTCCTTCAAAAAATAAGACTTAGAGGTGATTCCTTTTACTGTCAATACTGTATGATTCTAACTCTCGTCTTTTCCTCTCTTAG
Seq C2 exon
AGAATGTCTCTGCTCCTCCTGACGTCACTGCGACTACCTCTTCCTCCTCTTCCTTACTGCGTCCCGCCAACATTGACCTGCCCCCATCCGGCATAGTCAAAGGCATGCACAAAGGCTCCAACAGGTCCAGCCTCATGGACACAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106:ENSRNOT00000086577:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]