MmuINT0049600 @ mm10
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100151151-100154306:+
Coord C1 exon
chr15:100151151-100151363
Coord A exon
chr15:100151364-100154156
Coord C2 exon
chr15:100154157-100154306
Length
2793 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGA
5' ss Score
7
3' ss Seq
CTTGTCTTTTCCTCTCCTAGAAA
3' ss Score
10.23
Exon sequences
Seq C1 exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATTCAGGGATCGTCCACTTCTTCATCTGCATCTTCCACGCTGTCCCATGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTGTTTGCCAATACTCGAATAG
Seq A exon
GTAGGAGTTGGATCTACCCAAGAAACCCACCCAATGTTCCACTTGGCAACCAGTATCCAGGAAACAGTTTTTGATTGTGTTAAGTTTTCGAAGGCTTAGAAAGTTTGATCACAGAGAACAGTTAATGAGGTAGAGAGGGAAAGGCCACAGTGTGTTCATTGCAGGGTGATGGGTGTCATCGCCAGGATTGTACAGAACATCCCTCACCTGAAGCCATATCTATTTCTATAAGCAATACTGAAGCTGCGAAATAGAACACCAGTCTGAGTATGGGTTTATCCAAAAAAAAAAAAAAAAAAAAGTCCCTATGTCAGAGCTTCTAAGCATTTAGCAGCTCAGATTTCCCAGGGATACTGTCTGCATTTCATACAGCATGCATAGCTAACTGGTGCAGATTCCACACCAAGCCATTGTCAGCAAGACCTTTTGTCCTTAGCCTAAAGACTGGATTTATGTCGCTTGCTGCTGTGGCATTGCTGCATGAGCAGTGTGCAGATCAGTTGGCATGCTGAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGTGTGGAGTGCTGTGGCTTGCCTCTGCTTTATGCACTTGTGAATTTTGGTGTTGTTTCCCAAGGTCTCTGCTTCCCTTCCTCAAGAAGTGCCCTGTCCCACCCTTGTGCTGTGTCTGTTGTCTTACCTGTTTCCTTGACAACCAGTCACATTTCGTTGTCTTAGTTGGCATCTCAGCAACCTTCCTTATCACATTTATATAACATTTCAATTTGATTTCTGAAAAGGCTGGAAAATTTTAATTTAACATTATAGTTTTTAATGAAGATACCTACCTACCTTGTTAGTATAATTACCACATAAAAGCTACCTGCCATCCATGGTAGCCCCCTCAACCCTGTATCACACCTCTCATGGCCACCATATGCAGACAGCAATGTTCTCCACCACACCATCACAGACAACAAACCTCTGAGATGTGAGAGTTTACATAGAATATGTCTTAAAGAGCGTTTCCCTTGCAAAGGGGAATCTAGACACCTACTTCACCTGACTGGGTTTTGTTAAAACAGTTCCACATCCTCCTTGTGCTTCTGTTAATTTTTAAAACTGAGTTACAGAAACTATCACATGCAGTGTTGCTACTTTTGGATGTTAGTGATTACTGACGTAATTCCTGTTCCTTAAAGAGACTGTAGTCTCTTAAGAGCATGGTGGCGCACACCCTTGACATCAGCACTCAGGAGACATCATGAACATGGTACATGTTTATAATTATATTGTTCTTGTTGTGATTTTAAAGCATAGCACTGTTTGTCTGTGCCTTAGCTCACTTAGCCTCTTACAGAGACTGCCCAGATGAACTTGCTGGATCAAAGACAATAAGCATTTCTAATTGGGTCAATCCAGCACTTGGAAGGTGGGGCAGGATTGAGGCTAACCTGGGCTACATAGCAGGATCACTTCTTGAGAAACAGACAAAACGAAGCACAGAGCTGGGTGTGCTGGCACACACATGTAATCCCAGCACTCACAAGGCTGAGCTAGAAGACTCACAAATTCAAAGTCTCTTGAGGTACAAGAGACAAAAAGAAAACACTGATGCCTTCTCAGCCACGCTAACCACAATGGACTCAAGTCAGTGTGTTTCAGATTTTAAAAAGTATTAAATTATAAAGTATTAAATTTATAAGACTCATAATCACAGGGCTTTGAAGCACAGAAATCTTACTCTTAAAGCAATCTTACAATCTTTCCCTCCTCTTACTTTTAGTGGTTTTATTATTTTTACATTGTACAGTTTACTTCCTCTAATTTTCTTCTTCTTCAGAAGAATTTTCGTAGCCCTGTTGAGTAGTTCTCCTTTTACATCACTCACTCTCTGACAGCAGCTTACTTCCCGTGTTATGACTGGCCCCCTGACAGGGCATGCAGGATACCCACACCTGTAATCCCAGCAGGAGGAGCAGCTGACCCAACTGATGAGACCCTGTCTCAAAAAAATAAAACTCTAAAGAATTTTTCCAGGAAGTAGCATATGTGTGTTAATCTCTGCCGAGATCAAGAAGGAGCCTTGCCTGGTGGTGGGTCCAGCCTCACTGTGGGCTGTTTTATCAGAACTAGAAGTTGACTTCACCTCATTTCCCATCATCTGAGAGCCTGGGTCATCTGGCCCACTGTGAGCCATGGTAGGCAAAACACAACATGAGGAAGTGTCCTAGGCTGGAGAACTGGTGGCAAACTGGCCATTTACTCACTGTCAACATTCTAGGTTGCTTTACAACATTGAATTTCTACTTATGCATTCTATAAGAAAATAACATTTTTGAGAAACATGCTAGGTGATTTGATGTAATAACTAAGGTTACTCAGTTCTTGAAAATTATAGTTTTGGAAAGCCGATATGAACTGGTTTACCTTAGACTTTGATTATACAGTCTGTTTTAGGGCCAGGGGGTGGCTCAGCAGGTAAAGGCACTCGCCCTAGGACCCCAGCCGGTCCTTGGAATCACCAGCTCCCAGACACTGTACTCTGATCTCCAGTCGTGCACTCTGTAAACACGTATACACTCACACACACACACACACACACACACACACACACACACGTGTCCACATACATACATGCACACACACATGCATTACATACATATACTATACACATTCTTATAATGATGAATAAAATCTTTTTTTAAAGCCTGTTTTAAAAGAGCGAGTGCTTTTCATTCCTTCAAAAGCAATGGGTGTAGAAGTGGTTCCCTTTACTGTCAGTACCGTATGATTTTAACTCTTGTCTTTTCCTCTCCTAG
Seq C2 exon
AAAATGTCTCTGCTCCTCCCGACGTCACTGCAACTACCTCTTCCTCCTCTTCCTCACTTCGCCCTGCAAACATTGACCTGCCCCCCTCTGGCATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026:ENSMUST00000100203:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types