GgaINT1011328 @ galGal4
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:175632-178254:-
Coord C1 exon
chrLGE22C19W28_E50C23:178042-178254
Coord A exon
chrLGE22C19W28_E50C23:175776-178041
Coord C2 exon
chrLGE22C19W28_E50C23:175632-175775
Length
2266 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGA
5' ss Score
7
3' ss Seq
TTTTTTTTTTTAATTTTTAGAAA
3' ss Score
10.54
Exon sequences
Seq C1 exon
ACACGTCTTCCGCATCCGAGGATGAGGGGTCACTAAGGCGTCAAGCTGCTCTTTCTGCTGCATTGCATCAGAGCTTACAGAATGCTGAGTCTTGGATCAACCGATCTATTCAGGGGTCATCCACATCTTCATCAGCATCCTCTACACTTTCCCATGGAGAAGGCAAAGGGACCAGTGGGTCACTAGCTGATGTATTTGCCAATACTCGAATAG
Seq A exon
GTAGGAGATGGGTACAAACAGAACAATTGCTTCAAGTTCAGACTGTATGTATAAAGCTGGAGTTGTCCGTTGTGTAAGGGAAATTTGGAACAAGAGTTCAGTTCTGGTGAAACTTGAGAGGATCACAACTTTTTTTCCCCTGTAGGAGTTTCAGAATACTGGGTTGGTGGAAAAAAGGGGAAGTGGGGAGCGGGAGGTTACTGAAGTAGGAGAGGTTCCATGGTGTGTTGAGGGCACTGACAGTGGGCATGACTTCGGTTCTGTACACAGCATCGCTTATGTCTACAGATAGTTGAAGTTACTGCATGCACAAAGCTGCCATGTGCAAATAGCATTTGGCATCTGTGCCCTGACTACAGGACATGGGCAGTGTCTTTGCCTATTGAGTGGGGGAAATGCTATATTTTAACATTCACCAAATGGTTTATTGTTTGTGTTGTATCAAAAGAAGAACAAACAAACAGAAAAAGAACCCCACAAACAACAGAGCAGCCAAATAGGAGAACAACTGAGCCAAAATGGCTGCAGTGAAGTGAAGATGTAGCGTAGGTCTTTCATGACTAGTCTGAGAATTAATCAGCGTTGTGGTTTTGAGAAGATGGAGCAAAAACCTACGGATCTGGATACCCCAGGCTCAGTTTTTTGAGGCTCTGAGGTGCTCCTTGCTGCTGATGCTTCTGTATGAAATTGCAGTTTGTTTTTGCTCTGTGTATGTTTCTTTTTTATCTGCTGTTAAGGATACTACTGCATCTTAGGAGATGTCTGTATGTTGTGTGCTCTCTGCTTTTGCTTAACTGGTTTGGGGCAAGCAGTGCCTAGAAGTGCTGGTGTTTTTGTTTCACTTTTTTTTCCCCTCTGTTATTTTTTGTTTGTTTGTTTCTTTGCTGCGATGCAAGTTGGCTTCTGAAATGGCAGACTGGGGGAGTTGCCTGTAAAATGTAGTCAAAGTAGTGAATCTGTTTATGAAGTGCAGAGGCTCTTCTTAGTTGGGGAATGCAGAAAGCCACCTTAACTTCTGTAATGAATTAAGGTAATCTAATTTTTTATCTATAGAATAACTGCTGTCTAATATAATTAGAAGTTAATGCAGAATAGCATTGGGTTTTTTTGCTGCATTGACACCACATTCATCCTGCGGTAACACCTAAGTCAAAAGAATGGGAATTCTGGTATACACAATTGGGTACAGCTCTTTGGAGAGAAAGATAAAAAGCCCTGCAAATATTTGAAGTTGTATAAAATCTGAGTCCTTCCGAGCGAGCTTAGAAGTTCAGTACATGAGAAATATTCCTTGCCACCATATCTCCAAAGGTATGCGGTTTTTTCTTAGAGAGAGGAGCAGAGAGAATCAGTTGCATAAACCTTGCTGAATTCCTTCAGACTATCTTTGTAAGCTAATGTGCAGTTTCAAGATTTGTTTTTTTCCCCTTCAAAAGCAACAGTTGCTACTTCTACTAAGCTAGAATAGAACATTTGTGCCCTATCAGATAATTGAGCCTATGGTGTTGTTTAAAGAAATCCCATGTAAGCAAAAATGGCTTACAGAAGAAGTTGATGAGTTACTGAAATACGCAGTTATTGCAGTTTTGAAGCTTACAAACTCATCTGAAAAGCAGAACAGTGCCTTGCAGCTTAAAGCAAAAGCCAGACCCAGCTCACTCTCCTCGTTATTTAACTGCTGGACAGGCTCACACTGTGCAGCCACTGAGCTGGAAGAAATGTAAGCCTGATGTGATTGTTTGCTGATGTGCTGTAGTCAATAGACTCCTGCTTGTTTGGTTTTAGAAGGCTTTACTGGCCAAAACAAAAGTTATGTAGTATAGTTCTAGCAAGAGAGATTACAGTGCAGGTGATGCAGGTTGCTGTTCTGGAGTTCTGAATATTTCAGATGTCACCTGGATTTTAAGCTTTTTTTTAACAGTACTGAATGCCAGGAGATAAGCTTGATTTTGAAGGTTTGTGACCAAAACCAAATTATCTGAATATTTTACCAAACAGCTTTCCTGACCTGGATAAAGCTACTCATCTTGTGCCTTTGCTTTCTGGAATAAATAACATATGCTTCCCAGAGTTACTTAATATTTAGGAAGCAACAAGTTTAGCATTATTAAGAGGCCTCATAAATGCAACCCATTGAATTATTTTTAAGCTGGTTGGTAGCAGGTAATTCATGCTTTGCTTTTTCCATCTGATAATAAGTGGTATATGTTAATTATCATCTTAATTATCTCCCCCCCCCCCCTTTTTTTTTTTTTTTAATTTTTAG
Seq C2 exon
AAAATTTCTCAGTTCCCCCAGATGTCACAGCAACTACCTCCTCTTCCTCTACACGCCCAGCAGCAATTGACCTTCCTCCTTCAGGGATCGTGAAGGGCATGCACAAGGGATCCAATCGGTCCAGTCTGATGGATACTGCCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]