MmuINT0058055 @ mm9
Intron Retention
Gene
ENSMUSG00000069495 | Epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278321]
Coordinates
chr2:49392096-49392688:+
Coord C1 exon
chr2:49392096-49392244
Coord A exon
chr2:49392245-49392344
Coord C2 exon
chr2:49392345-49392688
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGTCTTATATTGCTTTACAGGGT
3' ss Score
9.91
Exon sequences
Seq C1 exon
CCGCGTTTGGACCAAGCTAATAACCATATGTGTGAAAATTCAGAGTTGGCAGACTTGGATAAGTTGAGGTATAAGCATTGTCTTACGACACTTACAGTTCCAAGAAGATGTATAGGATTTGCAAGGAGGCGAATTGGCAGAGGTGGCAG
Seq A exon
GTAAGCTGCTTTGACCTTGTAGCATTGTCTAGCTGAAAGGCAATCAATAGAGAAACAGTTATATATGATATACACATGTATGTCTTATATTGCTTTACAG
Seq C2 exon
GGTCATAATGGACCGAATATCCACAGAACATGACCCCGTCCTGAAACAGATAGACCCTGAGATGCTGAACGGGTTTTCAAGCTCTTCCCAAACTATAGACTTTTCTTCTAATTTCTCTCGGACCAATGCTTCCAGTAAACCTTGTGAAAATAGACTGTCTCTTTCTGAAATATTAAGCAATATCAGATCATGTCGACTACAGTGTTTCCAGCCAAGGCTACTAAATGTACAGGACATTGATAGTGAAGAATGTACCTCAAGAAAACCAGGGCAGACTGTGAGCAGTAAAAGAGTTTCTGCAGCATCCGTAGCTTTATTGAACACCAGCAAGAACGGCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069495-Epc2:NM_172663:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.272
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTTGCAAGGAGGCGAATT
R:
GCCTTGGCTGGAAACACTGTA
Band lengths:
254-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: