HsaINT0056906 @ hg19
Intron Retention
Gene
ENSG00000135999 | EPC2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:24543]
Coordinates
chr2:149528361-149528956:+
Coord C1 exon
chr2:149528361-149528506
Coord A exon
chr2:149528507-149528612
Coord C2 exon
chr2:149528613-149528956
Length
106 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
GGTTTTATTTTGCTTTTCAGGGT
3' ss Score
9.83
Exon sequences
Seq C1 exon
CCTCGTTTGGACCAAGCTAACCATTCATGTGAAAATTCAGAATTGGCAGATTTGGATAAGTTGAGGTATAGGCATTGCCTTACAACACTTACAGTCCCAAGAAGATGTATAGGATTTGCAAGGAGGCGAATTGGCAGAGGTGGAAG
Seq A exon
GTGAAGTATTTGTTTTCACCTGGTTTTTGTTTGCTATCTGGAACAGAAGACAAAGAGAACATGTTCAGCTCTCTCAGTTAATATTTGGTTTTATTTTGCTTTTCAG
Seq C2 exon
GGTCATAATGGACCGAATATCCACAGAACATGACCCAGTCCTGAAACAGATAGACCCTGAAATGCTGAATAGTTTTTCAAGCTCTTCCCAAACTATAGACTTTTCTTCTAATTTCTCTCGGACCAATGCTTCCAGTAAACATTGTGAAAATAGACTGTCTCTTTCTGAAATATTAAGCAATATCAGATCATGTCGACTACAGTGTTTCCAGCCAAGGCTACTAAATTTACAGGACAGTGATAGTGAAGAATGTACCTCAAGAAAACCAGGGCAGACTGTGAACAATAAAAGAGTTTCTGCAGCATCTGTAGCTTTATTGAACACCAGCAAGAATGGCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135999-EPC2:NM_015630:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.345
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTTGCAAGGAGGCGAATT
R:
GCCTTGGCTGGAAACACTGTA
Band lengths:
254-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)