DreINT0063576 @ danRer10
Intron Retention
Gene
ENSDARG00000007485 | epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-802]
Coordinates
chr9:25542472-25543577:-
Coord C1 exon
chr9:25543438-25543577
Coord A exon
chr9:25542762-25543437
Coord C2 exon
chr9:25542472-25542761
Length
676 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GCACTGTTGTTCACCTCCAGGGT
3' ss Score
9.18
Exon sequences
Seq C1 exon
CCGGTGGTGGATCAGAGCTGTTCTCCTCATTGGCAGCAGACGGGTCAGGATCAGCTGTGGCAGCGGAACTGTCTCACTGCCCTCTCTGTGCCTAGACGGTGCATCGCAGTGGCTTGTAGGAGAGTGGGCAGAGGTGGCAG
Seq A exon
GTATGGCCCTGTTTACACTTTTTGCATATGGCTTTTTAGCTTTTTCTTGCTGAGTTGTTCTGAGTTTATTTGTTTTTTATTATTTGTAATTCACAGTATTTCTTGCGATTTTAAGATTTTTTTTCTGAAACATTGAAACGTTTTTCTGAAACGTTGCGTAAACATCTCATGGCTTTTATCCTCTGAAAATTGTGACTTGCAATGACAAGTTTATTTGCTTTCCAACCTAAAAAATATACATATGTTTAAATGTATTTAATAGTCTTTAAACAAATTTCTCAAAATGATTTCTCTCTGAATTGAGTTAACATTTAGTTGATTTCCTGCAAAAAAGTTTTTCTCCCAATTCAAAATTAAGATCTCACTGTTCTGTCGTTCTCAGAGTTGCAATCTTTATAAAAACAAAGTCAGTTGTGAGAGGGAAAAAAAAGGTAGAATTAAAAATTTTAACACACAATTGCTAGTTTGTTGCAAAAATGCATACAATGCTGCAGTTGCCTTGTTTGTTTTTTGTTTAAAGGTTTATAGTTTCCTCTGCTGAATTTTGTTTCACTTTAGACTCGACATGGTGCAAAATATGCTTTTGTTTCTCTAGATAAAAACAGAATCCCTTATGATCAATTCTAAAGGTCACAGGTTTTGCCATATATCTGAAAGCACTGTTGTTCACCTCCAG
Seq C2 exon
GGTTGTTTTGGATCGCACCTCATCAGATCTGGATCATTCCCTCGGGCACCTGGACCCTGATATGCTTTATCCCTCCTCCGGCTCATGTGTGCCTGACCTCCCCGTCCACACAAATACAAACTCTCACGTCTCGCAACGCTCTCTGACTCAGCTTCTCGGTGACATCCAGGCCTGCAGGTGGAAGTTTTTTCGGCCTCGGCCGCTGCAGGACAACTCTAGGGCTGAGGACAAGAAAGGGACCCCGCCGGTGGAAAAAGGTGGAGGGACGACACTCTCTAACAGCGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007485:ENSDART00000021672:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTCACTGCCCTCTCTGT
R:
GTCGTCCCTCCACCTTTTTCC
Band lengths:
342-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]