HsaINT0056906 @ hg38
Intron Retention
Gene
ENSG00000135999 | EPC2
Description
enhancer of polycomb homolog 2 [Source:HGNC Symbol;Acc:HGNC:24543]
Coordinates
chr2:148770792-148771387:+
Coord C1 exon
chr2:148770792-148770937
Coord A exon
chr2:148770938-148771043
Coord C2 exon
chr2:148771044-148771387
Length
106 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
GGTTTTATTTTGCTTTTCAGGGT
3' ss Score
9.83
Exon sequences
Seq C1 exon
CCTCGTTTGGACCAAGCTAACCATTCATGTGAAAATTCAGAATTGGCAGATTTGGATAAGTTGAGGTATAGGCATTGCCTTACAACACTTACAGTCCCAAGAAGATGTATAGGATTTGCAAGGAGGCGAATTGGCAGAGGTGGAAG
Seq A exon
GTGAAGTATTTGTTTTCACCTGGTTTTTGTTTGCTATCTGGAACAGAAGACAAAGAGAACATGTTCAGCTCTCTCAGTTAATATTTGGTTTTATTTTGCTTTTCAG
Seq C2 exon
GGTCATAATGGACCGAATATCCACAGAACATGACCCAGTCCTGAAACAGATAGACCCTGAAATGCTGAATAGTTTTTCAAGCTCTTCCCAAACTATAGACTTTTCTTCTAATTTCTCTCGGACCAATGCTTCCAGTAAACATTGTGAAAATAGACTGTCTCTTTCTGAAATATTAAGCAATATCAGATCATGTCGACTACAGTGTTTCCAGCCAAGGCTACTAAATTTACAGGACAGTGATAGTGAAGAATGTACCTCAAGAAAACCAGGGCAGACTGTGAACAATAAAAGAGTTTCTGCAGCATCTGTAGCTTTATTGAACACCAGCAAGAATGGCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135999:ENST00000258484:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.302
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTTGCAAGGAGGCGAATT
R:
GCCTTGGCTGGAAACACTGTA
Band lengths:
254-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development